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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33166-RB through 18771 annotations produced 1 hits



rhomboid-2 (stet):

Annotation Number : CG33166
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020248
Gbrowse : chr3L:1475447-1489547 (-) // 100.0 //
Probeset : 1641652_a_at
Accessions : protein= NP_788450; /// NP_788451;, nucleotide= NM_176272; /// NM_176273;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from electr
Interpro : 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding
FlyMine data for FBgn0020248.
BioGrid reports that CG33166 interacts with CG4646 CG17610 CG17610 CG4385 CG4385 CG4385 CG4385 CG1004 .
VDRC has 2 RNAi stocks for FBgn0020248 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 24 of 4 0.10Down
Head5 ± 01 of 4 0.00Down
Eye4 ± 11 of 4 0.03Down
Thoracicoabdominal ganglion9 ± 03 of 4 0.10Down
Salivary gland11 ± 01 of 4 0.09Down
Crop11 ± 14 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule6 ± 40 of 4 0.00Down
Hindgut5 ± 01 of 4 0.00Down
Heart4 ± 00 of 4 0.03Down
Fat body13 ± 34 of 4 0.10Down
Ovary509 ± 84 of 4 3.70Up
Testis3 ± 02 of 4 0.00Down
Male accessory glands4 ± 00 of 4 0.00Down
Virgin spermatheca8 ± 13 of 4 0.06Down
Mated spermatheca3 ± 11 of 4 0.03Down
Adult carcass13 ± 62 of 4 0.10Down
Larval CNS65 ± 74 of 4 0.48Down
Larval Salivary gland4 ± 11 of 4 0.03Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule4 ± 12 of 4 0.00Down
Larval hindgut3 ± 12 of 4 0.03Down
Larval fat body8 ± 21 of 4 0.10Down
Larval trachea0 ± 00 of 4 0.00Down
Larval carcass2 ± 01 of 4 0.02Down
S2 cells (growing)1 ± 10 of 4 0.01Down
Whole fly136 ± 74 of 4

Looking for CG33166-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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