FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG33178-RA through 18771 annotations produced 1 hits

(CG33178):

Annotation Number : CG33178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053178
Gbrowse : chrX:14976859-14977812 (+) // 100.0 //
Probeset : 1640334_at
Accessions : protein= NP_788903; /// NP_788904;, nucleotide= NM_176730; /// NM_176731;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0053178.
BDGP gene expression has embryonic in situ data for CG33178: 9 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0053178 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	11 ± 1	4 of 4	0.10	Down
Head	838 ± 69	4 of 4	6.40	Up
Eye	586 ± 17	4 of 4	4.49	Up
Thoracicoabdominal ganglion	17 ± 2	4 of 4	0.10	Down
Salivary gland	23 ± 3	1 of 4	0.18	Down
Crop	1935 ± 30	4 of 4	14.80	Up
Midgut	18 ± 1	4 of 4	0.10	Down
Tubule	8 ± 1	1 of 4	0.10	Down
Hindgut	811 ± 30	4 of 4	6.20	Up
Heart	56 ± 6	4 of 4	0.44	Down
Fat body	68 ± 18	4 of 4	0.53	Down
Ovary	5 ± 0	3 of 4	0.00	Down
Testis	4 ± 0	0 of 4	0.00	Down
Male accessory glands	5 ± 1	0 of 4	0.00	Down
Virgin spermatheca	22 ± 3	4 of 4	0.17	Down
Mated spermatheca	29 ± 2	4 of 4	0.23	Down
Adult carcass	675 ± 44	4 of 4	5.20	Up
Larval CNS	15 ± 0	4 of 4	0.12	Down
Larval Salivary gland	12 ± 2	2 of 4	0.10	Down
Larval midgut	23 ± 3	4 of 4	0.18	Down
Larval tubule	8 ± 1	1 of 4	0.10	Down
Larval hindgut	217 ± 22	4 of 4	1.66	Up
Larval fat body	10 ± 2	2 of 4	0.10	Down
Larval trachea	959 ± 354	4 of 4	7.35	Up
Larval carcass	1172 ± 131	4 of 4	8.97	Up
S2 cells (growing)	45 ± 1	4 of 4	0.35	Down
Whole fly	130 ± 6	4 of 4

Looking for CG33178-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720