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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33181-RA through 18771 annotations produced 1 hits



(CG33181):

Annotation Number : CG33181
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053181
Gbrowse : chrX:8404257-8409959 (+) // 100.0 //
Probeset : 1628563_at
Accessions : protein= NP_001096908; /// NP_001096910; /// NP_001096911; /// NP_001096912; /// NP_788885;, nucleotide= NM_001103438; /// NM_001103440; /// NM_001103441; /// NM_001103442; /// NM_176712;
Interpro : 0008324 // cation transmembrane transporter activity // inferred from electronic annotation
FlyMine data for FBgn0053181.
TRiP has 3 RNAi stocks for FBgn0053181 available for purchase.
VDRC has 3 RNAi stocks for FBgn0053181 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain237 ± 54 of 4 2.20Up
Head83 ± 94 of 4 0.80None
Eye200 ± 74 of 4 1.84Up
Thoracicoabdominal ganglion271 ± 34 of 4 2.50Up
Salivary gland114 ± 104 of 4 1.05None
Crop83 ± 64 of 4 0.80None
Midgut378 ± 144 of 4 3.50Up
Tubule153 ± 114 of 4 1.40Up
Hindgut24 ± 04 of 4 0.20Down
Heart7 ± 20 of 4 0.07Down
Fat body9 ± 50 of 4 0.09Down
Ovary145 ± 24 of 4 1.30Up
Testis67 ± 44 of 4 0.60Down
Male accessory glands202 ± 54 of 4 1.90Up
Virgin spermatheca6 ± 20 of 4 0.06Down
Mated spermatheca7 ± 30 of 4 0.07Down
Adult carcass37 ± 63 of 4 0.30Down
Larval CNS69 ± 54 of 4 0.64Down
Larval Salivary gland33 ± 64 of 4 0.30Down
Larval midgut244 ± 74 of 4 2.24Up
Larval tubule129 ± 104 of 4 1.20None
Larval hindgut73 ± 54 of 4 0.67Down
Larval fat body13 ± 31 of 4 0.10Down
Larval trachea157 ± 184 of 4 1.44Up
Larval carcass55 ± 64 of 4 0.51Down
S2 cells (growing)10 ± 20 of 4 0.09Down
Whole fly109 ± 114 of 4

Looking for CG33181-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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