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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33182-RA through 18771 annotations produced 1 hits



CG33182 (Kdm4B):

Annotation Number : CG33182
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053182
Gbrowse : chr2R:9073720-9085781 (-) // 100.0 //
Probeset : 1629788_at
Accessions : protein= NP_001163137; /// NP_001163138; /// NP_001163139; /// NP_788344;, nucleotide= NM_001169666; /// NM_001169667; /// NM_001169668; /// NM_176164;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : "0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0053182.
BDGP gene expression has embryonic in situ data for CG33182: 27 pix of staining in 21 body parts.
Homophila reports that CG33182 is a close match (1e-32) to human gene DXS1272E;JARID1C;MRXSJ;SMCX;XE169 (NP_004178), a gene associated with Mental retardation, X-linked, syndromic, JARID1C-related, 300534 (3).
TRiP has 1 RNAi stocks for FBgn0053182 available for purchase.
VDRC has 2 RNAi stocks for FBgn0053182 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 84 of 4 4.40Up
Head19 33 of 4 0.70None
Eye46 64 of 4 1.68None
Thoracicoabdominal ganglion57 34 of 4 2.00Up
Salivary gland8 40 of 4 0.30Down
Crop21 10 of 4 0.80None
Midgut32 20 of 4 1.20None
Tubule32 42 of 4 1.20None
Hindgut14 11 of 4 0.50Down
Heart22 24 of 4 0.79None
Fat body2 10 of 4 0.08Down
Ovary24 24 of 4 0.90None
Testis168 64 of 4 6.00Up
Male accessory glands6 10 of 4 0.20Down
Virgin spermatheca5 11 of 4 0.19Down
Mated spermatheca4 10 of 4 0.17Down
Adult carcass1 00 of 4 0.00Down
Larval CNS61 54 of 4 2.21Up
Larval Salivary gland6 10 of 4 0.23Down
Larval midgut8 00 of 4 0.29Down
Larval tubule11 31 of 4 0.40Down
Larval hindgut6 30 of 4 0.24Down
Larval fat body31 131 of 4 1.10None
Larval trachea23 33 of 4 0.84None
Larval carcass1 00 of 4 0.04Down
S2 cells (growing)44 44 of 4 1.59Up
Whole fly28 43 of 4

Looking for CG33182-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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