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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33193-RA through 18771 annotations produced 1 hits



salvador/shar-pei (sav):

Annotation Number : CG33193
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053193
Gbrowse : chr3R:18884328-18886991 (-) // 100.0 //
Probeset : 1628053_at
Accessions : protein= NP_788721;, nucleotide= NM_176544;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // traceable author stat
FlyMine data for FBgn0053193.
BDGP gene expression has embryonic in situ data for CG33193: 4 pix of staining in 1 body parts.
BioGrid reports that CG33193 interacts with CG3689 CG4818 CG4832 CG7456 CG8189 CG8808 CG8907 CG9354 CG9411 CG9911 CG5123 .
TRiP has 2 RNAi stocks for FBgn0053193 available for purchase.
VDRC has 4 RNAi stocks for FBgn0053193 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 ± 14 of 4 0.40Down
Head47 ± 14 of 4 0.50Down
Eye65 ± 34 of 4 0.67Down
Thoracicoabdominal ganglion41 ± 14 of 4 0.40Down
Salivary gland66 ± 74 of 4 0.68Down
Crop95 ± 14 of 4 1.00None
Midgut75 ± 34 of 4 0.80Down
Tubule84 ± 24 of 4 0.90Down
Hindgut75 ± 14 of 4 0.80Down
Heart61 ± 34 of 4 0.63Down
Fat body55 ± 34 of 4 0.57Down
Ovary205 ± 44 of 4 2.10Up
Testis87 ± 24 of 4 0.90None
Male accessory glands81 ± 24 of 4 0.80None
Virgin spermatheca73 ± 34 of 4 0.75Down
Mated spermatheca78 ± 34 of 4 0.80Down
Adult carcass64 ± 54 of 4 0.70Down
Larval CNS70 ± 34 of 4 0.73Down
Larval Salivary gland193 ± 114 of 4 1.99Up
Larval midgut124 ± 94 of 4 1.28None
Larval tubule113 ± 34 of 4 1.20None
Larval hindgut132 ± 64 of 4 1.36Up
Larval fat body147 ± 74 of 4 1.50Up
Larval trachea111 ± 54 of 4 1.14None
Larval carcass164 ± 74 of 4 1.69Up
S2 cells (growing)75 ± 34 of 4 0.77Down
Whole fly97 ± 64 of 4

Looking for CG33193-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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