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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG33196-RB through 18771 annotations produced 1 hits

dumpy (dp):

Annotation Number : CG33196
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053196
Gbrowse : chr2L:4479464-4574342 (-) // 47.32 //
Probeset : 1634075_at
Accessions : protein= NP_787974;, nucleotide= NM_175960;
Pathway : 0005578 // proteinaceous extracellular matrix // non-traceable author statement
Interpro : "0004519 // endonuclease activity // inferred from electronic annotation /// 0004867 // serine-type endopeptidase inhibi
FlyMine data for FBgn0053196.
BDGP gene expression has embryonic in situ data for CG33196: 23 pix of staining in 9 body parts.
Homophila reports that CG33196 is a close match (1e-11) to human gene COMP;EDM1;MED;PSACH (NP_000086), a gene associated with Epiphyseal dysplasia, multiple 1, 132400 (3);Pseudoachondroplasia, 177170 (3).
TRiP has 6 RNAi stocks for FBgn0053196 available for purchase.
VDRC has 9 RNAi stocks for FBgn0053196 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.20Down
Head31 54 of 4 1.40None
Eye427 874 of 419.18Up
Thoracicoabdominal ganglion9 21 of 4 0.40Down
Salivary gland81 283 of 4 3.66None
Crop170 214 of 4 7.70Up
Midgut16 10 of 4 0.70Down
Tubule8 00 of 4 0.40Down
Hindgut143 244 of 4 6.50Up
Heart19 03 of 4 0.87None
Fat body17 53 of 4 0.77None
Ovary5 00 of 4 0.30Down
Testis8 11 of 4 0.40Down
Male accessory glands14 23 of 4 0.70Down
Virgin spermatheca56 54 of 4 2.53Up
Mated spermatheca98 134 of 4 4.43Up
Adult carcass55 113 of 4 2.50None
Larval CNS12 10 of 4 0.55Down
Larval Salivary gland18 22 of 4 0.83None
Larval midgut11 20 of 4 0.50Down
Larval tubule10 10 of 4 0.50Down
Larval hindgut178 524 of 4 8.00None
Larval fat body16 60 of 4 0.70None
Larval trachea1048 854 of 447.05Up
Larval carcass116 124 of 4 5.24Up
S2 cells (growing)39 24 of 4 1.75Up
Whole fly22 14 of 4

Looking for CG33196-RB. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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