FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3320-RA through 18771 annotations produced 1 hits

Rab-protein 1 (Rab1):

Annotation Number : CG3320
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016700
Gbrowse : chr3R:17091747-17094831 (-) // 100.0 //
Probeset : 1634443_a_at
Accessions : protein= NP_732610;, nucleotide= NM_169953;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0016700.
BDGP gene expression has embryonic in situ data for Rab1: 4 pix of staining in 1 body parts.
Homophila reports that CG3320 is a close match (6e-11) to human gene ALPS4;NRAS (NP_002515), a gene associated with Autoimmune lymphoproliferative syndrome type IV (3);Colorectal cancer, 114500 (3);Thyroid carcinoma, follicular, 188470 (3).
BioGrid reports that CG3320 interacts with CG7347 .
TRiP has 2 RNAi stocks for FBgn0016700 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1340 ± 12	4 of 4	3.50	Up
Head	1061 ± 50	4 of 4	2.80	Up
Eye	1918 ± 36	4 of 4	5.06	Up
Thoracicoabdominal ganglion	1702 ± 25	4 of 4	4.50	Up
Salivary gland	2520 ± 41	4 of 4	6.65	Up
Crop	1301 ± 18	4 of 4	3.40	Up
Midgut	441 ± 9	4 of 4	1.20	None
Tubule	776 ± 22	4 of 4	2.00	Up
Hindgut	872 ± 14	4 of 4	2.30	Up
Heart	1341 ± 39	4 of 4	3.54	Up
Fat body	551 ± 48	4 of 4	1.46	Up
Ovary	164 ± 5	4 of 4	0.40	Down
Testis	125 ± 5	4 of 4	0.30	Down
Male accessory glands	1178 ± 28	4 of 4	3.10	Up
Virgin spermatheca	1280 ± 35	4 of 4	3.38	Up
Mated spermatheca	1164 ± 27	4 of 4	3.07	Up
Adult carcass	663 ± 10	4 of 4	1.70	Up
Larval CNS	1117 ± 31	4 of 4	2.95	Up
Larval Salivary gland	1408 ± 79	4 of 4	3.71	Up
Larval midgut	419 ± 7	4 of 4	1.11	None
Larval tubule	1418 ± 46	4 of 4	3.70	Up
Larval hindgut	734 ± 27	4 of 4	1.94	Up
Larval fat body	666 ± 58	4 of 4	1.80	Up
Larval trachea	1075 ± 45	4 of 4	2.84	Up
Larval carcass	744 ± 45	4 of 4	1.96	Up
S2 cells (growing)	1240 ± 21	4 of 4	3.27	Up
Whole fly	379 ± 25	4 of 4

Looking for CG3320-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720