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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33208-RB through 18771 annotations produced 1 hits



mical (Mical):

Annotation Number : CG33208
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053208
Gbrowse : chr3R:5828032-5867720 (-) // 99.68 //
Probeset : 1623984_s_at
Accessions : protein= NP_001138032; /// NP_788620; /// NP_788621; /// NP_788622; /// NP_788623; /// NP_788624; /// NP_788625; /// NP_788626; /// NP_788627;, nucleotide= NM_001144560; /// NM_176443; /// NM_176444; /// NM_176445; /// NM_176446; /// NM_176447; /// NM_176448; /// NM_176449; /// NM_176450;
Pathway : 0005829 // cytosol // non-traceable author statement /// 0005886 // plasma membrane // inferred from direct assay /// 00
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0053208.
BDGP gene expression has embryonic in situ data for MICAL: 8 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0053208 available for purchase.
VDRC has 8 RNAi stocks for FBgn0053208 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 ± 24 of 4 5.60Up
Head61 ± 24 of 4 2.20Up
Eye48 ± 14 of 4 1.73Up
Thoracicoabdominal ganglion95 ± 114 of 4 3.40Up
Salivary gland13 ± 50 of 4 0.48None
Crop119 ± 54 of 4 4.30Up
Midgut19 ± 31 of 4 0.70None
Tubule1 ± 00 of 4 0.10Down
Hindgut47 ± 24 of 4 1.70Up
Heart25 ± 34 of 4 0.92None
Fat body18 ± 50 of 4 0.64Down
Ovary31 ± 24 of 4 1.10None
Testis14 ± 12 of 4 0.50Down
Male accessory glands16 ± 50 of 4 0.60None
Virgin spermatheca8 ± 10 of 4 0.29Down
Mated spermatheca3 ± 00 of 4 0.11Down
Adult carcass69 ± 44 of 4 2.50Up
Larval CNS83 ± 94 of 4 2.97Up
Larval Salivary gland20 ± 01 of 4 0.73Down
Larval midgut20 ± 20 of 4 0.72None
Larval tubule42 ± 53 of 4 1.50None
Larval hindgut42 ± 44 of 4 1.50Up
Larval fat body147 ± 204 of 4 5.30Up
Larval trachea62 ± 84 of 4 2.24Up
Larval carcass95 ± 374 of 4 3.41None
S2 cells (growing)36 ± 34 of 4 1.30None
Whole fly28 ± 14 of 4

Looking for CG33208-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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