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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33229-RA through 18771 annotations produced 1 hits



(CG33229):

Annotation Number : CG33229
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053229
Gbrowse : chr3L:224130-225613 (+) // 100.0 //
Probeset : 1624535_at
Accessions : protein= NP_995945;, nucleotide= NM_206223;
FlyMine data for FBgn0053229.
BDGP gene expression has embryonic in situ data for CG33229: 25 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0053229 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 ± 74 of 4 0.50Down
Head119 ± 54 of 4 0.30Down
Eye138 ± 114 of 4 0.36Down
Thoracicoabdominal ganglion129 ± 34 of 4 0.30Down
Salivary gland363 ± 114 of 4 0.93None
Crop462 ± 194 of 4 1.20None
Midgut156 ± 64 of 4 0.40Down
Tubule502 ± 504 of 4 1.30Up
Hindgut296 ± 214 of 4 0.80Down
Heart169 ± 114 of 4 0.44Down
Fat body133 ± 174 of 4 0.34Down
Ovary830 ± 174 of 4 2.10Up
Testis25 ± 14 of 4 0.10Down
Male accessory glands178 ± 94 of 4 0.50Down
Virgin spermatheca264 ± 144 of 4 0.68Down
Mated spermatheca231 ± 94 of 4 0.59Down
Adult carcass178 ± 154 of 4 0.50Down
Larval CNS378 ± 324 of 4 0.97None
Larval Salivary gland291 ± 34 of 4 0.75Down
Larval midgut118 ± 244 of 4 0.30Down
Larval tubule323 ± 74 of 4 0.80None
Larval hindgut208 ± 234 of 4 0.53Down
Larval fat body266 ± 214 of 4 0.70Down
Larval trachea245 ± 164 of 4 0.63Down
Larval carcass313 ± 174 of 4 0.81Down
S2 cells (growing)170 ± 54 of 4 0.44Down
Whole fly389 ± 224 of 4

Looking for CG33229-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime