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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3325-RA through 18771 annotations produced 1 hits



Spindle-B (spn-B):

Annotation Number : CG3325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003480
Gbrowse : chr3R:10153785-10155331 (+) // 100.0 //
Probeset : 1630018_at
Accessions : protein= NP_476740;, nucleotide= NM_057392;
Interpro : "0000150 // recombinase activity // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferr
FlyMine data for FBgn0003480.
BDGP gene expression has embryonic in situ data for spn-B: 4 pix of staining in 1 body parts.
Homophila reports that CG3325 is a close match (4e-12) to human gene RAD51A;RECA (NP_002866), a gene associated with {Breast cancer, susceptibility to}, 114480 (3).
BioGrid reports that CG3325 interacts with CG4879 CG7753 CG7753 CG10895 CG4252 CG14827 CG31069 Dmel CG8923 Dmel CG33935 .
VDRC has 3 RNAi stocks for FBgn0003480 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 14 of 4 0.30Down
Head17 ± 14 of 4 0.30Down
Eye14 ± 22 of 4 0.23Down
Thoracicoabdominal ganglion22 ± 14 of 4 0.30Down
Salivary gland27 ± 23 of 4 0.43Down
Crop19 ± 14 of 4 0.30Down
Midgut20 ± 24 of 4 0.30Down
Tubule16 ± 14 of 4 0.30Down
Hindgut15 ± 24 of 4 0.20Down
Heart11 ± 23 of 4 0.18Down
Fat body13 ± 14 of 4 0.22Down
Ovary132 ± 34 of 4 2.10Up
Testis15 ± 04 of 4 0.20Down
Male accessory glands12 ± 11 of 4 0.20Down
Virgin spermatheca14 ± 24 of 4 0.23Down
Mated spermatheca11 ± 12 of 4 0.18Down
Adult carcass12 ± 13 of 4 0.20Down
Larval CNS26 ± 54 of 4 0.42Down
Larval Salivary gland20 ± 14 of 4 0.31Down
Larval midgut12 ± 23 of 4 0.20Down
Larval tubule16 ± 14 of 4 0.30Down
Larval hindgut10 ± 14 of 4 0.16Down
Larval fat body14 ± 03 of 4 0.20Down
Larval trachea28 ± 44 of 4 0.44Down
Larval carcass18 ± 14 of 4 0.30Down
S2 cells (growing)16 ± 24 of 4 0.26Down
Whole fly63 ± 44 of 4

Looking for CG3325-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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