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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33257-RA through 18771 annotations produced 1 hits



(CG33257):

Annotation Number : CG33257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053257
Gbrowse : chr3L:16339422-16340720 (+) // 100.0 //
Probeset : 1624298_at
Accessions : protein= NP_996107;, nucleotide= NM_206385;
FlyMine data for FBgn0053257.
VDRC has 1 RNAi stocks for FBgn0053257 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.60None
Head4 ± 10 of 4 0.60None
Eye1 ± 00 of 4 0.19None
Thoracicoabdominal ganglion4 ± 10 of 4 0.70None
Salivary gland10 ± 20 of 4 1.45None
Crop8 ± 11 of 4 1.20None
Midgut9 ± 00 of 4 1.30None
Tubule3 ± 00 of 4 0.50Down
Hindgut8 ± 10 of 4 1.20None
Heart2 ± 10 of 4 0.34None
Fat body6 ± 30 of 4 0.84None
Ovary4 ± 12 of 4 0.60None
Testis6 ± 00 of 4 0.90None
Male accessory glands8 ± 10 of 4 1.20None
Virgin spermatheca3 ± 10 of 4 0.46None
Mated spermatheca4 ± 00 of 4 0.62None
Adult carcass4 ± 10 of 4 0.60None
Larval CNS4 ± 11 of 4 0.64None
Larval Salivary gland5 ± 10 of 4 0.80None
Larval midgut7 ± 10 of 4 1.05None
Larval tubule5 ± 20 of 4 0.80None
Larval hindgut6 ± 00 of 4 0.83None
Larval fat body5 ± 20 of 4 0.80None
Larval trachea0 ± 00 of 4 0.07Down
Larval carcass3 ± 20 of 4 0.50None
S2 cells (growing)6 ± 00 of 4 0.86None
Whole fly7 ± 21 of 4

Looking for CG33257-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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