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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33276-RA through 18771 annotations produced 1 hits



(CG33276):

Annotation Number : CG33276
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053276
Gbrowse : chr3L:7632990-7633601 (-) // 100.0 //
Probeset : 1629568_at
Accessions : protein= NP_996018;, nucleotide= NM_206296;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred
Interpro : 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity
FlyMine data for FBgn0053276.
VDRC has 2 RNAi stocks for FBgn0053276 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 34 of 4 1.50Up
Head54 54 of 4 1.10None
Eye31 24 of 4 0.62None
Thoracicoabdominal ganglion83 44 of 4 1.60Up
Salivary gland33 24 of 4 0.67None
Crop48 54 of 4 0.90None
Midgut33 24 of 4 0.60None
Tubule62 34 of 4 1.20Up
Hindgut38 44 of 4 0.70None
Heart43 24 of 4 0.85None
Fat body39 84 of 4 0.78None
Ovary73 44 of 4 1.40Up
Testis7 12 of 4 0.20Down
Male accessory glands93 114 of 4 1.80Up
Virgin spermatheca51 64 of 4 1.01None
Mated spermatheca63 94 of 4 1.24None
Adult carcass38 24 of 4 0.70None
Larval CNS125 74 of 4 2.47Up
Larval Salivary gland61 34 of 4 1.20None
Larval midgut31 44 of 4 0.62None
Larval tubule56 44 of 4 1.10None
Larval hindgut40 34 of 4 0.80None
Larval fat body28 14 of 4 0.60None
Larval trachea79 114 of 4 1.55Up
Larval carcass56 34 of 4 1.11None
S2 cells (growing)48 14 of 4 0.95None
Whole fly51 74 of 4

Looking for CG33276-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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