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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG33341-RA through 18771 annotations produced 1 hits



(CG33341):

Annotation Number : CG33341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053341
Gbrowse : chr3R:20194079-20195116 (+) // 100.0 //
Probeset : 1631247_at
Accessions : protein= NP_996282;, nucleotide= NM_206559;
FlyMine data for FBgn0053341.
VDRC has 1 RNAi stocks for FBgn0053341 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.80None
Head1 ± 00 of 4 1.30None
Eye1 ± 00 of 4 1.18None
Thoracicoabdominal ganglion1 ± 00 of 4 1.20None
Salivary gland9 ± 30 of 410.45None
Crop1 ± 00 of 4 2.00None
Midgut1 ± 00 of 4 1.70None
Tubule4 ± 10 of 4 4.90Up
Hindgut2 ± 10 of 4 2.80None
Heart2 ± 00 of 4 2.47None
Fat body3 ± 20 of 4 3.32None
Ovary0 ± 00 of 4 0.80None
Testis1 ± 00 of 4 1.30None
Male accessory glands3 ± 10 of 4 3.90None
Virgin spermatheca3 ± 00 of 4 3.16None
Mated spermatheca5 ± 20 of 4 5.39None
Adult carcass1 ± 00 of 4 1.70None
Larval CNS0 ± 00 of 4 0.71None
Larval Salivary gland2 ± 10 of 4 2.87None
Larval midgut1 ± 00 of 4 1.32None
Larval tubule5 ± 10 of 4 5.50None
Larval hindgut21 ± 73 of 422.74None
Larval fat body3 ± 10 of 4 3.90None
Larval trachea1 ± 10 of 4 1.74None
Larval carcass0 ± 00 of 4 0.66None
S2 cells (growing)1 ± 00 of 4 1.45None
Whole fly1 ± 00 of 4

Looking for CG33341-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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