FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3346-RA through 18771 annotations produced 1 hits

Partner of Numb (pon):

Annotation Number : CG3346
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025739
Gbrowse : chrX:4530362-4533145 (+) // 100.0 //
Probeset : 1628732_at
Accessions : protein= NP_525072;, nucleotide= NM_080333;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005938 // cell cortex // inferred from direct assay /// 0045178
FlyMine data for FBgn0025739.
TRiP has 1 RNAi stocks for FBgn0025739 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025739 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	0 of 4	0.20	Down
Head	8 ± 1	2 of 4	0.30	Down
Eye	4 ± 0	0 of 4	0.18	Down
Thoracicoabdominal ganglion	12 ± 1	4 of 4	0.50	Down
Salivary gland	6 ± 2	0 of 4	0.24	Down
Crop	11 ± 1	2 of 4	0.40	Down
Midgut	10 ± 0	1 of 4	0.40	Down
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	9 ± 1	1 of 4	0.40	Down
Heart	3 ± 0	0 of 4	0.12	Down
Fat body	8 ± 3	0 of 4	0.31	Down
Ovary	102 ± 7	4 of 4	3.90	Up
Testis	18 ± 2	4 of 4	0.70	None
Male accessory glands	7 ± 1	0 of 4	0.30	Down
Virgin spermatheca	4 ± 1	1 of 4	0.19	Down
Mated spermatheca	5 ± 0	0 of 4	0.19	Down
Adult carcass	12 ± 3	2 of 4	0.50	Down
Larval CNS	399 ± 42	4 of 4	15.37	Up
Larval Salivary gland	10 ± 2	1 of 4	0.41	Down
Larval midgut	20 ± 1	4 of 4	0.77	None
Larval tubule	6 ± 1	1 of 4	0.30	Down
Larval hindgut	15 ± 1	4 of 4	0.61	Down
Larval fat body	16 ± 2	4 of 4	0.60	Down
Larval trachea	39 ± 2	4 of 4	1.52	Up
Larval carcass	27 ± 3	4 of 4	1.07	None
S2 cells (growing)	105 ± 3	4 of 4	4.06	Up
Whole fly	26 ± 2	4 of 4

Looking for CG3346-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720