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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3347-RA through 18771 annotations produced 1 hits



(CG3347):

Annotation Number : CG3347
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031513
Gbrowse : chr2L:3259801-3271696 (+) // 100.0 //
Probeset : 1637800_at
Accessions : protein= NP_722887;, nucleotide= NM_164530;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0031513.
VDRC has 2 RNAi stocks for FBgn0031513 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.30Down
Head4 20 of 4 0.30Down
Eye1 00 of 4 0.13Down
Thoracicoabdominal ganglion3 00 of 4 0.20Down
Salivary gland11 20 of 4 0.83None
Crop6 20 of 4 0.50None
Midgut6 30 of 4 0.50None
Tubule3 10 of 4 0.20Down
Hindgut4 00 of 4 0.30Down
Heart4 10 of 4 0.35Down
Fat body15 40 of 4 1.14None
Ovary1 00 of 4 0.10Down
Testis182 104 of 413.10Up
Male accessory glands8 20 of 4 0.60None
Virgin spermatheca11 20 of 4 0.79None
Mated spermatheca7 20 of 4 0.53Down
Adult carcass13 30 of 4 0.90None
Larval CNS3 20 of 4 0.25Down
Larval Salivary gland7 10 of 4 0.53Down
Larval midgut6 10 of 4 0.43Down
Larval tubule8 20 of 4 0.60None
Larval hindgut6 10 of 4 0.45Down
Larval fat body47 163 of 4 3.40None
Larval trachea6 30 of 4 0.49Down
Larval carcass4 10 of 4 0.31Down
S2 cells (growing)6 10 of 4 0.50Down
Whole fly14 10 of 4

Looking for CG3347-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime