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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3350-RA through 18771 annotations produced 1 hits



bigmax (bigmax):

Annotation Number : CG3350
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039509
Gbrowse : chr3R:23113086-23114217 (-) // 100.0 //
Probeset : 1628490_at
Accessions : protein= NP_651556;, nucleotide= NM_143299;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0039509.
BDGP gene expression has embryonic in situ data for bigmax: 6 pix of staining in 2 body parts.
TRiP has 3 RNAi stocks for FBgn0039509 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039509 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 24 of 4 1.00None
Head194 34 of 4 1.40Up
Eye263 124 of 4 1.84Up
Thoracicoabdominal ganglion114 54 of 4 0.80Down
Salivary gland221 134 of 4 1.54Up
Crop189 54 of 4 1.30Up
Midgut293 154 of 4 2.00Up
Tubule588 524 of 4 4.10Up
Hindgut185 64 of 4 1.30Up
Heart269 194 of 4 1.87Up
Fat body309 84 of 4 2.15Up
Ovary127 24 of 4 0.90Down
Testis19 14 of 4 0.10Down
Male accessory glands220 124 of 4 1.50Up
Virgin spermatheca341 94 of 4 2.38Up
Mated spermatheca276 154 of 4 1.93Up
Adult carcass239 84 of 4 1.70Up
Larval CNS80 44 of 4 0.56Down
Larval Salivary gland119 44 of 4 0.83Down
Larval midgut206 104 of 4 1.43Up
Larval tubule319 154 of 4 2.20Up
Larval hindgut124 154 of 4 0.86None
Larval fat body446 524 of 4 3.10Up
Larval trachea143 404 of 4 1.00None
Larval carcass90 84 of 4 0.63Down
S2 cells (growing)115 24 of 4 0.81Down
Whole fly143 44 of 4

Looking for CG3350-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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