Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3362-RA through 18771 annotations produced 1 hits



(CG3362):

Annotation Number : CG3362
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034988
Gbrowse : chr2R:20083064-20084552 (+) // 100.0 //
Probeset : 1635461_at
Accessions : protein= NP_611895;, nucleotide= NM_138051;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0008253 // 5'-nucleotidase activity // infer
FlyMine data for FBgn0034988.
Homophila reports that CG3362 is a close match (3e-56) to human gene NT5C3;PSN1;UMPH1 (NP_057573), a gene associated with Anemia, hemolytic, due to UMPH1 deficiency, 266120 (3).
VDRC has 2 RNAi stocks for FBgn0034988 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 14 of 4 0.90None
Head66 ± 54 of 4 0.70Down
Eye72 ± 34 of 4 0.75Down
Thoracicoabdominal ganglion99 ± 24 of 4 1.00None
Salivary gland162 ± 134 of 4 1.67Up
Crop130 ± 64 of 4 1.30Up
Midgut557 ± 124 of 4 5.80Up
Tubule70 ± 34 of 4 0.70Down
Hindgut258 ± 74 of 4 2.70Up
Heart107 ± 34 of 4 1.11None
Fat body97 ± 74 of 4 1.01None
Ovary90 ± 24 of 4 0.90None
Testis11 ± 04 of 4 0.10Down
Male accessory glands60 ± 64 of 4 0.60Down
Virgin spermatheca44 ± 44 of 4 0.46Down
Mated spermatheca45 ± 24 of 4 0.46Down
Adult carcass113 ± 14 of 4 1.20None
Larval CNS81 ± 74 of 4 0.84None
Larval Salivary gland50 ± 24 of 4 0.52Down
Larval midgut329 ± 174 of 4 3.40Up
Larval tubule32 ± 24 of 4 0.30Down
Larval hindgut184 ± 134 of 4 1.91Up
Larval fat body34 ± 34 of 4 0.40Down
Larval trachea98 ± 44 of 4 1.02None
Larval carcass76 ± 104 of 4 0.79None
S2 cells (growing)253 ± 44 of 4 2.62Up
Whole fly96 ± 54 of 4

Looking for CG3362-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime