FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3371-RA through 18771 annotations produced 1 hits

(CG3371):

Annotation Number : CG3371
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035153
Gbrowse : chr3L:682878-685545 (-) // 100.0 //
Probeset : 1636161_at
Accessions : protein= NP_612050;, nucleotide= NM_138206;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation"
FlyMine data for FBgn0035153.
BDGP gene expression has embryonic in situ data for CG3371: 15 pix of staining in 19 body parts.
BioGrid reports that CG3371 interacts with CG7059 .
TRiP has 2 RNAi stocks for FBgn0035153 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035153 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	165 ± 3	4 of 4	1.70	Up
Head	105 ± 6	4 of 4	1.10	None
Eye	95 ± 2	4 of 4	0.98	None
Thoracicoabdominal ganglion	146 ± 4	4 of 4	1.50	Up
Salivary gland	121 ± 3	4 of 4	1.24	Up
Crop	145 ± 1	4 of 4	1.50	Up
Midgut	62 ± 4	4 of 4	0.60	Down
Tubule	101 ± 10	4 of 4	1.00	None
Hindgut	124 ± 6	4 of 4	1.30	Up
Heart	55 ± 2	4 of 4	0.57	Down
Fat body	65 ± 7	4 of 4	0.67	Down
Ovary	223 ± 3	4 of 4	2.30	Up
Testis	15 ± 1	4 of 4	0.20	Down
Male accessory glands	93 ± 6	4 of 4	0.90	None
Virgin spermatheca	130 ± 5	4 of 4	1.33	Up
Mated spermatheca	158 ± 5	4 of 4	1.61	Up
Adult carcass	90 ± 1	4 of 4	0.90	Down
Larval CNS	169 ± 11	4 of 4	1.73	Up
Larval Salivary gland	144 ± 8	4 of 4	1.47	Up
Larval midgut	62 ± 3	4 of 4	0.64	Down
Larval tubule	80 ± 3	4 of 4	0.80	Down
Larval hindgut	86 ± 6	4 of 4	0.88	None
Larval fat body	55 ± 4	4 of 4	0.60	Down
Larval trachea	15 ± 3	4 of 4	0.16	Down
Larval carcass	30 ± 3	4 of 4	0.31	Down
S2 cells (growing)	243 ± 5	4 of 4	2.49	Up
Whole fly	98 ± 1	4 of 4

Looking for CG3371-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720