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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3380-RA through 18771 annotations produced 1 hits



Organic anion transporting polypeptide 58Dc (Oatp58Dc):

Annotation Number : CG3380
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034716
Gbrowse : chr2R:18111185-18115744 (-) // 100.0 //
Probeset : 1627078_at
Accessions : protein= NP_001097409; /// NP_001163251; /// NP_611659;, nucleotide= NM_001103939; /// NM_001169780; /// NM_137815;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transp
FlyMine data for FBgn0034716.
BDGP gene expression has embryonic in situ data for CG3380: 27 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0034716 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain449 124 of 4 2.00Up
Head199 84 of 4 0.90None
Eye239 114 of 4 1.05None
Thoracicoabdominal ganglion609 234 of 4 2.70Up
Salivary gland9 20 of 4 0.04Down
Crop4 20 of 4 0.00Down
Midgut10 10 of 4 0.00Down
Tubule6251 1154 of 427.50Up
Hindgut97 104 of 4 0.40Down
Heart9 11 of 4 0.04Down
Fat body7 51 of 4 0.03Down
Ovary2 00 of 4 0.00Down
Testis4 11 of 4 0.00Down
Male accessory glands11 01 of 4 0.10Down
Virgin spermatheca15 31 of 4 0.07Down
Mated spermatheca10 10 of 4 0.05Down
Adult carcass30 24 of 4 0.10Down
Larval CNS133 54 of 4 0.59Down
Larval Salivary gland9 21 of 4 0.04Down
Larval midgut9 00 of 4 0.04Down
Larval tubule2089 644 of 4 9.20Up
Larval hindgut15 24 of 4 0.07Down
Larval fat body6 20 of 4 0.00Down
Larval trachea8 81 of 4 0.04Down
Larval carcass7 20 of 4 0.03Down
S2 cells (growing)6 00 of 4 0.03Down
Whole fly227 184 of 4

Looking for CG3380-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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