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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3382-RA through 18771 annotations produced 1 hits


CG6070 /// Organic anion transporting polypeptide 58Db (gb /// Oatp58Db):

Annotation Number : CG3382
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034715
Gbrowse : chr2R:18108696-18111095 (-) // 100.0 //
Probeset : 1637928_at
Accessions : protein= NP_611658;, nucleotide= NM_137814;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0034715.
BioGrid reports that CG3382 interacts with CG6453 CG7191 .
VDRC has 1 RNAi stocks for FBgn0034715 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland2 ± 10 of 4 0.04Down
Crop2 ± 00 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule3505 ± 1344 of 447.30Up
Hindgut33 ± 52 of 4 0.40Down
Heart2 ± 10 of 4 0.03Down
Fat body6 ± 90 of 4 0.08Down
Ovary3 ± 10 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 00 of 4 0.07Down
Mated spermatheca2 ± 00 of 4 0.03Down
Adult carcass3 ± 20 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule1979 ± 794 of 426.70Up
Larval hindgut4 ± 10 of 4 0.06Down
Larval fat body2 ± 10 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.02Down
Larval carcass1 ± 10 of 4 0.03Down
S2 cells (growing)3 ± 00 of 4 0.05Down
Whole fly74 ± 104 of 4

Looking for CG3382-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime