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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3385-RA through 18771 annotations produced 1 hits



nervy (nvy):

Annotation Number : CG3385
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005636
Gbrowse : chr2R:20163259-20178611 (+) // 100.0 //
Probeset : 1623977_at
Accessions : protein= NP_523841;, nucleotide= NM_079117;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007411 // axon guidance // inferred from mutant phenotype ///
FlyMine data for FBgn0005636.
BDGP gene expression has embryonic in situ data for nvy: 31 pix of staining in 14 body parts.
TRiP has 1 RNAi stocks for FBgn0005636 available for purchase.
VDRC has 3 RNAi stocks for FBgn0005636 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain339 ± 154 of 415.50Up
Head84 ± 84 of 4 3.90Up
Eye9 ± 04 of 4 0.44Down
Thoracicoabdominal ganglion290 ± 104 of 413.20Up
Salivary gland922 ± 364 of 442.02Up
Crop14 ± 14 of 4 0.60Down
Midgut19 ± 14 of 4 0.90None
Tubule63 ± 124 of 4 2.90Up
Hindgut9 ± 04 of 4 0.40Down
Heart17 ± 14 of 4 0.78None
Fat body9 ± 34 of 4 0.43Down
Ovary0 ± 00 of 4 0.00Down
Testis44 ± 14 of 4 2.00Up
Male accessory glands9 ± 22 of 4 0.40Down
Virgin spermatheca10 ± 14 of 4 0.48Down
Mated spermatheca6 ± 13 of 4 0.30Down
Adult carcass13 ± 14 of 4 0.60Down
Larval CNS403 ± 634 of 418.40Up
Larval Salivary gland702 ± 654 of 431.99Up
Larval midgut10 ± 04 of 4 0.47Down
Larval tubule30 ± 24 of 4 1.40Up
Larval hindgut29 ± 24 of 4 1.34None
Larval fat body16 ± 34 of 4 0.70None
Larval trachea5 ± 32 of 4 0.26Down
Larval carcass27 ± 24 of 4 1.27None
S2 cells (growing)245 ± 164 of 411.16Up
Whole fly22 ± 14 of 4

Looking for CG3385-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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