FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3395-RB through 18771 annotations produced 2 hits

Ribosomal protein S9 (RpS9):

Annotation Number : CG3395
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010408
Gbrowse : chr3L:9502989-9504642 (-) // 100.0 //
Probeset : 1624070_at
Accessions : protein= NP_524004; /// NP_729506; /// NP_729507;, nucleotide= NM_079280; /// NM_168350; /// NM_168351;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statemen
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0010408.
BDGP gene expression has embryonic in situ data for RpS9: 4 pix of staining in 1 body parts.
BioGrid reports that CG3395 interacts with CG4385 CG3427 CG3953 CG4393 CG6542 CG8239 CG9099 CG9653 .
TRiP has 1 RNAi stocks for FBgn0010408 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010408 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	95 ± 3	4 of 4	0.70	Down
Head	104 ± 9	4 of 4	0.80	Down
Eye	144 ± 3	4 of 4	1.04	None
Thoracicoabdominal ganglion	113 ± 7	4 of 4	0.80	Down
Salivary gland	234 ± 11	4 of 4	1.69	Up
Crop	130 ± 11	4 of 4	0.90	None
Midgut	245 ± 17	4 of 4	1.80	Up
Tubule	121 ± 13	4 of 4	0.90	None
Hindgut	95 ± 4	4 of 4	0.70	Down
Heart	193 ± 13	4 of 4	1.39	Up
Fat body	271 ± 32	4 of 4	1.95	Up
Ovary	114 ± 8	4 of 4	0.80	None
Testis	13 ± 0	4 of 4	0.10	Down
Male accessory glands	447 ± 45	4 of 4	3.20	Up
Virgin spermatheca	287 ± 19	4 of 4	2.07	Up
Mated spermatheca	310 ± 6	4 of 4	2.23	Up
Adult carcass	178 ± 17	4 of 4	1.30	None
Larval CNS	155 ± 7	4 of 4	1.12	Up
Larval Salivary gland	159 ± 14	4 of 4	1.15	None
Larval midgut	90 ± 4	4 of 4	0.65	Down
Larval tubule	116 ± 15	4 of 4	0.80	None
Larval hindgut	118 ± 9	4 of 4	0.85	None
Larval fat body	72 ± 6	4 of 4	0.50	Down
Larval trachea	378 ± 41	4 of 4	2.72	Up
Larval carcass	176 ± 7	4 of 4	1.27	Up
S2 cells (growing)	457 ± 16	4 of 4	3.30	Up
Whole fly	139 ± 5	4 of 4

Ribosomal protein S9 (RpS9):

Annotation Number : CG3395
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010408
Gbrowse : chr3L:9502980-9504642 (-) // 100.0 //
Probeset : 1635388_s_at
Accessions : protein= NP_524004; /// NP_729506; /// NP_729507;, nucleotide= NM_079280; /// NM_168350; /// NM_168351;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statemen
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0010408.
BDGP gene expression has embryonic in situ data for RpS9: 4 pix of staining in 1 body parts.
BioGrid reports that CG3395 interacts with CG4385 CG3427 CG3953 CG4393 CG6542 CG8239 CG9099 CG9653 .
TRiP has 1 RNAi stocks for FBgn0010408 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010408 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2926 ± 77	4 of 4	0.80	Down
Head	4148 ± 131	4 of 4	1.10	None
Eye	5225 ± 70	4 of 4	1.34	Up
Thoracicoabdominal ganglion	3461 ± 119	4 of 4	0.90	None
Salivary gland	9565 ± 251	4 of 4	2.46	Up
Crop	4912 ± 283	4 of 4	1.30	Up
Midgut	4803 ± 55	4 of 4	1.20	Up
Tubule	4764 ± 54	4 of 4	1.20	Up
Hindgut	4311 ± 147	4 of 4	1.10	None
Heart	6003 ± 479	4 of 4	1.54	Up
Fat body	4425 ± 496	4 of 4	1.14	None
Ovary	2981 ± 89	4 of 4	0.80	Down
Testis	927 ± 24	4 of 4	0.20	Down
Male accessory glands	7250 ± 298	4 of 4	1.90	Up
Virgin spermatheca	3805 ± 193	4 of 4	0.98	None
Mated spermatheca	4076 ± 135	4 of 4	1.05	None
Adult carcass	5069 ± 211	4 of 4	1.30	Up
Larval CNS	2157 ± 184	4 of 4	0.55	Down
Larval Salivary gland	5875 ± 277	4 of 4	1.51	Up
Larval midgut	3527 ± 90	4 of 4	0.91	None
Larval tubule	3921 ± 59	4 of 4	1.00	None
Larval hindgut	3506 ± 67	4 of 4	0.90	None
Larval fat body	6548 ± 738	4 of 4	1.70	Up
Larval trachea	5288 ± 357	4 of 4	1.36	Up
Larval carcass	3666 ± 297	4 of 4	0.94	None
S2 cells (growing)	3713 ± 102	4 of 4	0.96	None
Whole fly	3888 ± 259	4 of 4

Looking for CG3395-RB. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720