Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3401-RA through 18771 annotations produced 1 hits



beta-tubulin at 60D (betaTub60D):

Annotation Number : CG3401
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003888
Gbrowse : chr2R:20193404-20200626 (+) // 100.0 //
Probeset : 1639503_at
Accessions : protein= NP_523842;, nucleotide= NM_079118;
Pathway : 0005874 // microtubule // inferred from direct assay /// 0005874 // microtubule // inferred from sequence or structural
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0003888.
BDGP gene expression has embryonic in situ data for betaTub60D: 25 pix of staining in 10 body parts.
Homophila reports that CG3401 is a close match (3e-95) to human gene LIS3;TUBA1A;TUBA3 (NP_006000), a gene associated with Lissencephaly 3, 611603 (3).
VDRC has 4 RNAi stocks for FBgn0003888 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 44 of 4 0.20Down
Head119 ± 84 of 4 0.50Down
Eye28 ± 24 of 4 0.12Down
Thoracicoabdominal ganglion27 ± 04 of 4 0.10Down
Salivary gland88 ± 34 of 4 0.38Down
Crop53 ± 24 of 4 0.20Down
Midgut466 ± 484 of 4 2.00Up
Tubule698 ± 314 of 4 3.00Up
Hindgut163 ± 64 of 4 0.70Down
Heart388 ± 364 of 4 1.68Up
Fat body180 ± 184 of 4 0.78Down
Ovary141 ± 104 of 4 0.60Down
Testis518 ± 104 of 4 2.20Up
Male accessory glands87 ± 164 of 4 0.40Down
Virgin spermatheca58 ± 34 of 4 0.25Down
Mated spermatheca86 ± 74 of 4 0.37Down
Adult carcass219 ± 164 of 4 0.90None
Larval CNS330 ± 114 of 4 1.43Up
Larval Salivary gland52 ± 154 of 4 0.23Down
Larval midgut338 ± 344 of 4 1.46Up
Larval tubule3380 ± 1744 of 414.60Up
Larval hindgut177 ± 174 of 4 0.77Down
Larval fat body1098 ± 854 of 4 4.70Up
Larval trachea257 ± 1064 of 4 1.11None
Larval carcass414 ± 444 of 4 1.79Up
S2 cells (growing)2508 ± 344 of 410.83Up
Whole fly231 ± 104 of 4

Looking for CG3401-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime