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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3403-RA through 18771 annotations produced 1 hits



Mob4 (Mob4):

Annotation Number : CG3403
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259483
Gbrowse : chr2R:2582618-2584130 (-) // 100.0 //
Probeset : 1627426_at
Accessions : protein= NP_610229;, nucleotide= NM_136385;
Pathway : 0005813 // centrosome // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from elec
FlyMine data for FBgn0259483.
BioGrid reports that CG3403 interacts with CG4164 CG4771 CG5733 CG7146 CG8965 .
VDRC has 2 RNAi stocks for FBgn0259483 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain977 ± 104 of 4 1.40Up
Head560 ± 224 of 4 0.80Down
Eye592 ± 134 of 4 0.87Down
Thoracicoabdominal ganglion815 ± 204 of 4 1.20Up
Salivary gland530 ± 174 of 4 0.78Down
Crop723 ± 194 of 4 1.10None
Midgut569 ± 104 of 4 0.80Down
Tubule327 ± 114 of 4 0.50Down
Hindgut645 ± 124 of 4 0.90None
Heart435 ± 224 of 4 0.64Down
Fat body298 ± 154 of 4 0.44Down
Ovary1046 ± 154 of 4 1.50Up
Testis917 ± 114 of 4 1.30Up
Male accessory glands807 ± 114 of 4 1.20Up
Virgin spermatheca367 ± 134 of 4 0.54Down
Mated spermatheca336 ± 234 of 4 0.49Down
Adult carcass357 ± 124 of 4 0.50Down
Larval CNS1316 ± 184 of 4 1.93Up
Larval Salivary gland698 ± 84 of 4 1.03None
Larval midgut635 ± 204 of 4 0.93None
Larval tubule768 ± 224 of 4 1.10Up
Larval hindgut686 ± 244 of 4 1.01None
Larval fat body698 ± 124 of 4 1.00None
Larval trachea1023 ± 144 of 4 1.50Up
Larval carcass672 ± 334 of 4 0.99None
S2 cells (growing)842 ± 114 of 4 1.24Up
Whole fly680 ± 204 of 4

Looking for CG3403-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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