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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3409-RA through 18771 annotations produced 2 hits



(CG3409):

Annotation Number : CG3409
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033095
Gbrowse : chr2R:2587624-2603370 (-) // 100.0 //
Probeset : 1623039_at
Accessions : protein= NP_001163063; /// NP_610230;, nucleotide= NM_001169592; /// NM_136386;
Interpro : 0008028 // monocarboxylic acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0033095.
BDGP gene expression has embryonic in situ data for CG3409: 31 pix of staining in 27 body parts.
Homophila reports that CG3409 is a close match (3e-12) to human gene DXS128;SLC16A2;XPCT (NP_006508), a gene associated with Allan-Herndon-Dudley syndrome, 300523 (3).
VDRC has 2 RNAi stocks for FBgn0033095 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain173 ± 34 of 4 0.90None
Head213 ± 164 of 4 1.10None
Eye86 ± 94 of 4 0.44Down
Thoracicoabdominal ganglion167 ± 144 of 4 0.90None
Salivary gland39 ± 44 of 4 0.20Down
Crop102 ± 44 of 4 0.50Down
Midgut162 ± 114 of 4 0.80None
Tubule278 ± 154 of 4 1.40Up
Hindgut153 ± 104 of 4 0.80None
Heart297 ± 164 of 4 1.52Up
Fat body593 ± 424 of 4 3.03Up
Ovary235 ± 44 of 4 1.20None
Testis71 ± 54 of 4 0.40Down
Male accessory glands171 ± 164 of 4 0.90None
Virgin spermatheca187 ± 144 of 4 0.96None
Mated spermatheca247 ± 64 of 4 1.26Up
Adult carcass378 ± 214 of 4 1.90Up
Larval CNS161 ± 204 of 4 0.82None
Larval Salivary gland243 ± 294 of 4 1.24None
Larval midgut148 ± 134 of 4 0.76None
Larval tubule753 ± 214 of 4 3.80Up
Larval hindgut192 ± 74 of 4 0.98None
Larval fat body599 ± 254 of 4 3.10Up
Larval trachea88 ± 204 of 4 0.45Down
Larval carcass143 ± 174 of 4 0.73None
S2 cells (growing)89 ± 14 of 4 0.45Down
Whole fly196 ± 144 of 4



(CG3409):

Annotation Number : S.C2R000135
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033095
Gbrowse : chr2R:2592838-2593336 (-) // 100.0 //
Probeset : 1628622_s_at
Accessions : protein= NP_001163063; /// NP_610230;, nucleotide= NM_001169592; /// NM_136386;
Interpro : 0008028 // monocarboxylic acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0033095.
BDGP gene expression has embryonic in situ data for CG3409: 31 pix of staining in 27 body parts.
VDRC has 2 RNAi stocks for FBgn0033095 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 13 of 4 1.20None
Head7 ± 22 of 4 0.70None
Eye1 ± 00 of 4 0.14Down
Thoracicoabdominal ganglion6 ± 21 of 4 0.60None
Salivary gland6 ± 20 of 4 0.60None
Crop5 ± 20 of 4 0.50None
Midgut6 ± 10 of 4 0.60None
Tubule2 ± 00 of 4 0.20Down
Hindgut8 ± 10 of 4 0.70None
Heart6 ± 11 of 4 0.60None
Fat body12 ± 81 of 4 1.14None
Ovary10 ± 10 of 4 0.90None
Testis0 ± 00 of 4 0.00Down
Male accessory glands8 ± 20 of 4 0.80None
Virgin spermatheca2 ± 00 of 4 0.19Down
Mated spermatheca5 ± 10 of 4 0.47None
Adult carcass11 ± 42 of 4 1.00None
Larval CNS1 ± 20 of 4 0.18Down
Larval Salivary gland0 ± 00 of 4 0.08Down
Larval midgut2 ± 00 of 4 0.24Down
Larval tubule34 ± 64 of 4 3.10Up
Larval hindgut2 ± 00 of 4 0.20Down
Larval fat body50 ± 94 of 4 4.50Up
Larval trachea1 ± 20 of 4 0.17Down
Larval carcass2 ± 00 of 4 0.25Down
S2 cells (growing)9 ± 01 of 4 0.87None
Whole fly11 ± 22 of 4

Looking for CG3409-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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