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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3411-RA through 18771 annotations produced 1 hits



chr2R:20231235-20263998 (+) // 100.0 // (pruned):

Annotation Number : CG3411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630990_at
Accessions : protein= , nucleotide= NP_001137751; /// NP_726438;
Pathway : "0002168 // instar larval development // inferred from mutant phenotype /// 0006350 // transcription // inferred from el
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for full length.
BioGrid reports that CG3411 interacts with CG3954 CG3619 CG1007 CG1007 CG5460 CG9623 CG9623 CG4444 CG4444 CG9375 CG12559 CG12559 CG10079 CG10491 CG14228 CG14228 CG3936 CG3936 CG1771 CG1560 CG1560 CG1560 CG1560 CG1004 CG1004 CG1004 CG1004 CG1004 CG1004 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain114 14 of 4 0.90None
Head67 34 of 4 0.50Down
Eye58 34 of 4 0.45Down
Thoracicoabdominal ganglion102 24 of 4 0.80None
Salivary gland100 24 of 4 0.77Down
Crop71 24 of 4 0.60Down
Midgut107 34 of 4 0.80None
Tubule34 13 of 4 0.30Down
Hindgut54 24 of 4 0.40Down
Heart65 24 of 4 0.50Down
Fat body92 64 of 4 0.71Down
Ovary301 34 of 4 2.30Up
Testis30 14 of 4 0.20Down
Male accessory glands74 42 of 4 0.60Down
Virgin spermatheca55 10 of 4 0.42Down
Mated spermatheca63 40 of 4 0.49Down
Adult carcass78 33 of 4 0.60Down
Larval CNS169 104 of 4 1.31Up
Larval Salivary gland163 64 of 4 1.26Up
Larval midgut102 34 of 4 0.79None
Larval tubule108 54 of 4 0.80None
Larval hindgut76 14 of 4 0.59Down
Larval fat body100 54 of 4 0.80Down
Larval trachea67 94 of 4 0.52Down
Larval carcass118 44 of 4 0.91None
S2 cells (growing)133 34 of 4 1.03None
Whole fly129 94 of 4

Looking for CG3411-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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