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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3422-RA through 18771 annotations produced 1 hits



20s proteasome (Pros28.1):

Annotation Number : CG3422
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004066
Gbrowse : chrX:16170304-16171616 (+) // 100.0 //
Probeset : 1641485_at
Accessions : protein= NP_525092;, nucleotide= NM_080353;
Pathway : "0000502 // proteasome complex // non-traceable author statement /// 0000502 // proteasome complex // inferred from elec
Interpro : alpha-subunit complex // inferred from electronic annotation"
FlyMine data for FBgn0004066.
BDGP gene expression has embryonic in situ data for Pros28.1: 13 pix of staining in 20 body parts.
Homophila reports that CG3422 is a close match (2e-23) to human gene P27K;PROS27;PSMA6 (NP_002782), a gene associated with {Myocardial infarcation, susceptibility to} (3).
TRiP has 1 RNAi stocks for FBgn0004066 available for purchase.
VDRC has 4 RNAi stocks for FBgn0004066 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain171 84 of 4 0.30Down
Head305 224 of 4 0.50Down
Eye240 44 of 4 0.38Down
Thoracicoabdominal ganglion256 74 of 4 0.40Down
Salivary gland401 304 of 4 0.63Down
Crop509 254 of 4 0.80Down
Midgut503 204 of 4 0.80Down
Tubule612 414 of 4 1.00None
Hindgut328 44 of 4 0.50Down
Heart1175 834 of 4 1.84Up
Fat body1082 1034 of 4 1.69Up
Ovary971 84 of 4 1.50Up
Testis178 34 of 4 0.30Down
Male accessory glands550 294 of 4 0.90None
Virgin spermatheca562 294 of 4 0.88None
Mated spermatheca510 134 of 4 0.80Down
Adult carcass921 294 of 4 1.40Up
Larval CNS639 374 of 4 1.00None
Larval Salivary gland993 484 of 4 1.55Up
Larval midgut736 1214 of 4 1.15None
Larval tubule1491 904 of 4 2.30Up
Larval hindgut683 654 of 4 1.07None
Larval fat body704 754 of 4 1.10None
Larval trachea678 894 of 4 1.06None
Larval carcass1084 1324 of 4 1.70Up
S2 cells (growing)692 144 of 4 1.08None
Whole fly639 244 of 4

Looking for CG3422-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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