Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3423-RA through 18771 annotations produced 1 hits



Stromalin (SA):

Annotation Number : CG3423
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020616
Gbrowse : chr2L:6950439-6954590 (+) // 100.0 //
Probeset : 1626710_at
Accessions : protein= NP_477268;, nucleotide= NM_057920;
Pathway : "0000780 // condensed nuclear chromosome
Interpro : centromeric region // inferred from direct assay /// 0000922 // spindle pole // inferred from direct assay /// 0005634
FlyMine data for FBgn0020616.
TRiP has 2 RNAi stocks for FBgn0020616 available for purchase.
VDRC has 1 RNAi stocks for FBgn0020616 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain141 04 of 4 2.00Up
Head66 04 of 4 0.90None
Eye72 54 of 4 1.03None
Thoracicoabdominal ganglion90 34 of 4 1.30Up
Salivary gland59 54 of 4 0.84None
Crop61 34 of 4 0.90None
Midgut55 44 of 4 0.80Down
Tubule51 14 of 4 0.70Down
Hindgut56 34 of 4 0.80Down
Heart36 14 of 4 0.52Down
Fat body25 34 of 4 0.36Down
Ovary191 34 of 4 2.70Up
Testis8 02 of 4 0.10Down
Male accessory glands48 53 of 4 0.70Down
Virgin spermatheca23 14 of 4 0.33Down
Mated spermatheca33 24 of 4 0.47Down
Adult carcass48 74 of 4 0.70None
Larval CNS184 94 of 4 2.61Up
Larval Salivary gland65 34 of 4 0.93None
Larval midgut46 44 of 4 0.65Down
Larval tubule49 24 of 4 0.70Down
Larval hindgut46 24 of 4 0.66Down
Larval fat body26 33 of 4 0.40Down
Larval trachea72 74 of 4 1.03None
Larval carcass47 34 of 4 0.68Down
S2 cells (growing)130 54 of 4 1.85Up
Whole fly70 34 of 4

Looking for CG3423-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime