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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3433-RA through 18771 annotations produced 1 hits



Coproporphyrinogen oxidase (Coprox):

Annotation Number : CG3433
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021944
Gbrowse : chr2L:6964425-6965813 (+) // 100.0 //
Probeset : 1637191_at
Accessions : protein= NP_524777;, nucleotide= NM_080038;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0004109 // coproporphyrinogen oxidase activity // inferred from sequence or structural similarity /// 0004109 // copropo
FlyMine data for FBgn0021944.
BDGP gene expression has embryonic in situ data for Coprox: 10 pix of staining in 3 body parts.
Homophila reports that CG3433 is a close match (3e-125) to human gene CPO (NP_000088), a gene associated with Coproporphyria (3);Harderoporphyrinuria (3).
BioGrid reports that CG3433 interacts with CG6667 .
VDRC has 1 RNAi stocks for FBgn0021944 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 ± 44 of 4 0.30Down
Head71 ± 54 of 4 0.40Down
Eye63 ± 84 of 4 0.36Down
Thoracicoabdominal ganglion49 ± 54 of 4 0.30Down
Salivary gland111 ± 34 of 4 0.62Down
Crop206 ± 104 of 4 1.20None
Midgut321 ± 124 of 4 1.80Up
Tubule115 ± 44 of 4 0.60Down
Hindgut218 ± 64 of 4 1.20Up
Heart123 ± 64 of 4 0.69Down
Fat body121 ± 184 of 4 0.68Down
Ovary326 ± 84 of 4 1.80Up
Testis305 ± 104 of 4 1.70Up
Male accessory glands117 ± 54 of 4 0.70Down
Virgin spermatheca102 ± 24 of 4 0.57Down
Mated spermatheca108 ± 84 of 4 0.61Down
Adult carcass105 ± 34 of 4 0.60Down
Larval CNS83 ± 24 of 4 0.47Down
Larval Salivary gland262 ± 204 of 4 1.47Up
Larval midgut276 ± 234 of 4 1.55Up
Larval tubule113 ± 64 of 4 0.60Down
Larval hindgut159 ± 74 of 4 0.90None
Larval fat body115 ± 124 of 4 0.60Down
Larval trachea178 ± 224 of 4 1.00None
Larval carcass148 ± 94 of 4 0.84None
S2 cells (growing)505 ± 184 of 4 2.84Up
Whole fly178 ± 114 of 4

Looking for CG3433-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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