Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3437-RA through 18771 annotations produced 1 hits



(CG3437):

Annotation Number : CG3437
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035998
Gbrowse : chr3L:9449436-9450761 (-) // 100.0 //
Probeset : 1630154_at
Accessions : protein= NP_648318;, nucleotide= NM_140061;
FlyMine data for FBgn0035998.
BDGP gene expression has embryonic in situ data for CG3437: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0035998 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 34 of 4 0.60Down
Head35 ± 44 of 4 0.40Down
Eye51 ± 34 of 4 0.54Down
Thoracicoabdominal ganglion36 ± 54 of 4 0.40Down
Salivary gland63 ± 73 of 4 0.67Down
Crop48 ± 14 of 4 0.50Down
Midgut59 ± 34 of 4 0.60Down
Tubule52 ± 44 of 4 0.60Down
Hindgut41 ± 24 of 4 0.40Down
Heart36 ± 14 of 4 0.39Down
Fat body45 ± 44 of 4 0.48Down
Ovary179 ± 64 of 4 1.90Up
Testis47 ± 34 of 4 0.50Down
Male accessory glands39 ± 54 of 4 0.40Down
Virgin spermatheca48 ± 34 of 4 0.51Down
Mated spermatheca48 ± 54 of 4 0.51Down
Adult carcass48 ± 62 of 4 0.50Down
Larval CNS58 ± 34 of 4 0.62Down
Larval Salivary gland82 ± 84 of 4 0.86None
Larval midgut45 ± 20 of 4 0.48Down
Larval tubule76 ± 24 of 4 0.80None
Larval hindgut34 ± 24 of 4 0.37Down
Larval fat body55 ± 64 of 4 0.60Down
Larval trachea53 ± 54 of 4 0.56Down
Larval carcass50 ± 54 of 4 0.53Down
S2 cells (growing)41 ± 24 of 4 0.44Down
Whole fly95 ± 74 of 4

Looking for CG3437-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime