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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3455-RA through 18771 annotations produced 1 hits



chrX:6183500-6185276 (-) // 100.0 // (Rpt4):

Annotation Number : CG3455
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640710_at
Accessions : protein= , nucleotide= NP_572308;
Pathway : 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from sequence or structural
Interpro : "0005737 // cytoplasm // inferred from electronic annotation /// 0005838 // proteasome regulatory particle // inferred f
FlyMine data for full length.
Homophila reports that CG3455 is a close match (8e-12) to human gene BCS1L;BJS;FLNMS;GRACILE;PTD (NP_004319), a gene associated with Bjornstad syndrome, 262000 (3);GRACILE syndrome, 603358 (3);Leigh syndrome, 256000 (3);Mitochondrial complex III deficiency, 124000 (3).
BioGrid reports that CG3455 interacts with CG3455 CG7038 CG4276 CG7109 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain297 104 of 4 0.50Down
Head338 254 of 4 0.50Down
Eye396 74 of 4 0.62Down
Thoracicoabdominal ganglion376 144 of 4 0.60Down
Salivary gland458 134 of 4 0.72Down
Crop505 104 of 4 0.80Down
Midgut420 234 of 4 0.70Down
Tubule499 174 of 4 0.80Down
Hindgut426 84 of 4 0.70Down
Heart1414 334 of 4 2.21Up
Fat body1258 994 of 4 1.96Up
Ovary876 324 of 4 1.40Up
Testis176 124 of 4 0.30Down
Male accessory glands489 234 of 4 0.80Down
Virgin spermatheca260 114 of 4 0.41Down
Mated spermatheca228 134 of 4 0.36Down
Adult carcass996 244 of 4 1.60Up
Larval CNS865 394 of 4 1.35Up
Larval Salivary gland1238 664 of 4 1.93Up
Larval midgut1022 904 of 4 1.60Up
Larval tubule2375 494 of 4 3.70Up
Larval hindgut1092 1264 of 4 1.70Up
Larval fat body549 574 of 4 0.90None
Larval trachea870 774 of 4 1.36Up
Larval carcass1635 2284 of 4 2.55Up
S2 cells (growing)730 164 of 4 1.14Up
Whole fly640 134 of 4

Looking for CG3455-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime