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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3473-RA through 18771 annotations produced 1 hits


(CG3473):

Annotation Number : CG3473
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028913
Gbrowse : chr2L:14563071-14563726 (-) // 100.0 //
Probeset : 1631998_at
Accessions : protein= NP_609715;, nucleotide= NM_135871;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0016874 // ligase ac
FlyMine data for FBgn0028913.
BDGP gene expression has embryonic in situ data for BG:DS01486.1: 4 pix of staining in 1 body parts.
Homophila reports that CG3473 is a close match (9e-13) to human gene RAD6A;UBE2A (NP_861442), a gene associated with Mental retardation, X-linked syndromic (3).
VDRC has 3 RNAi stocks for FBgn0028913 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 02 of 4 0.10Down
Head7 ± 03 of 4 0.10Down
Eye5 ± 01 of 4 0.09Down
Thoracicoabdominal ganglion7 ± 12 of 4 0.10Down
Salivary gland19 ± 32 of 4 0.31Down
Crop6 ± 10 of 4 0.10Down
Midgut7 ± 10 of 4 0.10Down
Tubule7 ± 00 of 4 0.10Down
Hindgut6 ± 11 of 4 0.10Down
Heart4 ± 11 of 4 0.08Down
Fat body10 ± 32 of 4 0.16Down
Ovary3 ± 00 of 4 0.10Down
Testis675 ± 104 of 410.80Up
Male accessory glands12 ± 21 of 4 0.20Down
Virgin spermatheca9 ± 13 of 4 0.15Down
Mated spermatheca10 ± 13 of 4 0.17Down
Adult carcass23 ± 24 of 4 0.40Down
Larval CNS5 ± 23 of 4 0.08Down
Larval Salivary gland13 ± 03 of 4 0.21Down
Larval midgut6 ± 10 of 4 0.10Down
Larval tubule7 ± 03 of 4 0.10Down
Larval hindgut4 ± 11 of 4 0.08Down
Larval fat body82 ± 324 of 4 1.30None
Larval trachea5 ± 32 of 4 0.09Down
Larval carcass7 ± 02 of 4 0.12Down
S2 cells (growing)7 ± 12 of 4 0.12Down
Whole fly62 ± 24 of 4

Looking for CG3473-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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