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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3476-RA through 18771 annotations produced 1 hits



(CG3476):

Annotation Number : CG3476
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031881
Gbrowse : chr2L:7027593-7028959 (+) // 100.0 //
Probeset : 1629040_at
Accessions : protein= NP_609093;, nucleotide= NM_135249;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005476 // carnitine:acyl carnitine antiporte
FlyMine data for FBgn0031881.
Homophila reports that CG3476 is a close match (6e-12) to human gene ANT1;PEO3;SLC25A4;T1 (NP_001142), a gene associated with Progressive external ophthalmoplegia with mitochondrial DNA deletions, 157640 (3).
VDRC has 3 RNAi stocks for FBgn0031881 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 14 of 4 0.40Down
Head56 34 of 4 0.70Down
Eye95 84 of 4 1.14None
Thoracicoabdominal ganglion45 14 of 4 0.50Down
Salivary gland160 64 of 4 1.92Up
Crop138 74 of 4 1.70Up
Midgut157 54 of 4 1.90Up
Tubule141 94 of 4 1.70Up
Hindgut99 44 of 4 1.20Up
Heart57 14 of 4 0.68Down
Fat body52 24 of 4 0.63Down
Ovary127 24 of 4 1.50Up
Testis97 24 of 4 1.20Up
Male accessory glands98 74 of 4 1.20None
Virgin spermatheca63 54 of 4 0.75Down
Mated spermatheca62 34 of 4 0.75Down
Adult carcass74 42 of 4 0.90None
Larval CNS43 104 of 4 0.51Down
Larval Salivary gland32 12 of 4 0.39Down
Larval midgut58 33 of 4 0.70Down
Larval tubule43 24 of 4 0.50Down
Larval hindgut42 24 of 4 0.51Down
Larval fat body48 21 of 4 0.60Down
Larval trachea32 24 of 4 0.39Down
Larval carcass36 24 of 4 0.44Down
S2 cells (growing)94 64 of 4 1.13None
Whole fly83 34 of 4

Looking for CG3476-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime