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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3492-RA through 18771 annotations produced 1 hits



(CG3492):

Annotation Number : CG3492
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035007
Gbrowse : chr2R:20360234-20361756 (+) // 100.0 //
Probeset : 1636825_at
Accessions : protein= NP_611914;, nucleotide= NM_138070;
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005515 // protein bi
FlyMine data for FBgn0035007.
BioGrid reports that CG3492 interacts with CG6156 CG6607 CG7867 CG4394 CG4832 CG7945 CG8426 .
VDRC has 3 RNAi stocks for FBgn0035007 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.00Down
Head5 ± 10 of 4 0.10Down
Eye4 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland11 ± 40 of 4 0.11Down
Crop9 ± 20 of 4 0.10Down
Midgut3 ± 10 of 4 0.00Down
Tubule6 ± 00 of 4 0.10Down
Hindgut5 ± 10 of 4 0.00Down
Heart3 ± 00 of 4 0.04Down
Fat body12 ± 21 of 4 0.12Down
Ovary3 ± 00 of 4 0.00Down
Testis1173 ± 154 of 411.00Up
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca10 ± 10 of 4 0.10Down
Mated spermatheca9 ± 10 of 4 0.09Down
Adult carcass14 ± 20 of 4 0.10Down
Larval CNS5 ± 10 of 4 0.05Down
Larval Salivary gland4 ± 10 of 4 0.04Down
Larval midgut6 ± 00 of 4 0.06Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut5 ± 10 of 4 0.05Down
Larval fat body120 ± 584 of 4 1.10None
Larval trachea4 ± 51 of 4 0.05Down
Larval carcass9 ± 00 of 4 0.09Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly106 ± 34 of 4

Looking for CG3492-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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