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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3496-RA through 18771 annotations produced 1 hits



chr2R:19247785-19253777 (-) // 100.0 // (virilizer):

Annotation Number : CG3496
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630976_at
Accessions : protein= , nucleotide= NP_524900;
Pathway : "0000375 // RNA splicing
Interpro : via transesterification reactions // inferred from mutant phenotype /// 0000381 // regulation of alternative nuclear mR
FlyMine data for full length.
BioGrid reports that CG3496 interacts with CG4911 CG7224 CG4502 CG4824 CG5466 CG7622 CG9793 CG11680 CG10388 CG10385 CG3241 CG4528 CG4528 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CG18350 Dmel CG18350 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 22 of 4 1.50Up
Head28 00 of 4 0.80Down
Eye28 23 of 4 0.76Down
Thoracicoabdominal ganglion49 40 of 4 1.30None
Salivary gland44 40 of 4 1.18None
Crop41 30 of 4 1.10None
Midgut37 30 of 4 1.00None
Tubule35 01 of 4 0.90Down
Hindgut37 11 of 4 1.00None
Heart22 21 of 4 0.60Down
Fat body14 90 of 4 0.39Down
Ovary61 44 of 4 1.60Up
Testis19 10 of 4 0.50Down
Male accessory glands50 10 of 4 1.30Up
Virgin spermatheca36 41 of 4 0.97None
Mated spermatheca33 21 of 4 0.90None
Adult carcass33 00 of 4 0.90Down
Larval CNS84 74 of 4 2.26Up
Larval Salivary gland76 24 of 4 2.04Up
Larval midgut30 30 of 4 0.80None
Larval tubule39 42 of 4 1.10None
Larval hindgut48 42 of 4 1.29None
Larval fat body39 61 of 4 1.10None
Larval trachea58 72 of 4 1.58Up
Larval carcass36 31 of 4 0.97None
S2 cells (growing)63 24 of 4 1.69Up
Whole fly37 12 of 4

Looking for CG3496-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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