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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3501-RA through 18771 annotations produced 1 hits



(CG3501):

Annotation Number : CG3501
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034791
Gbrowse : chr2R:18768851-18770210 (-) // 100.0 //
Probeset : 1631546_at
Accessions : protein= NP_611731;, nucleotide= NM_137887;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034791.
BioGrid reports that CG3501 interacts with CG3678 CG6444 CG9986 .
VDRC has 2 RNAi stocks for FBgn0034791 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain506 84 of 4 1.60Up
Head295 294 of 4 0.90None
Eye431 144 of 4 1.38Up
Thoracicoabdominal ganglion331 84 of 4 1.10None
Salivary gland364 84 of 4 1.17None
Crop294 34 of 4 0.90None
Midgut313 94 of 4 1.00None
Tubule276 94 of 4 0.90Down
Hindgut308 74 of 4 1.00None
Heart335 134 of 4 1.07None
Fat body303 424 of 4 0.97None
Ovary367 124 of 4 1.20None
Testis571 144 of 4 1.80Up
Male accessory glands328 124 of 4 1.00None
Virgin spermatheca134 14 of 4 0.43Down
Mated spermatheca169 94 of 4 0.54Down
Adult carcass235 174 of 4 0.80Down
Larval CNS340 314 of 4 1.09None
Larval Salivary gland346 114 of 4 1.11None
Larval midgut204 34 of 4 0.65Down
Larval tubule289 94 of 4 0.90None
Larval hindgut268 94 of 4 0.86None
Larval fat body251 214 of 4 0.80None
Larval trachea298 214 of 4 0.95None
Larval carcass310 114 of 4 0.99None
S2 cells (growing)492 124 of 4 1.57Up
Whole fly313 224 of 4

Looking for CG3501-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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