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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3504-RA through 18771 annotations produced 1 hits



inactivation no afterpotential D (inaD):

Annotation Number : CG3504
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001263
Gbrowse : chr2R:18743210-18746317 (-) // 100.0 //
Probeset : 1638319_at
Accessions : protein= NP_726260;, nucleotide= NM_166566;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
Interpro : 0005198 // structural molecule activity // inferred from direct assay /// 0005198 // structural molecule activity // inf
FlyMine data for FBgn0001263.
BDGP gene expression has embryonic in situ data for inaD: 12 pix of staining in 2 body parts.
BioGrid reports that CG3504 interacts with CG6521 CG9933 CG5053 CG5203 CG8136 CG9411 CG9414 CG7875 CG7875 CG4550 CG7875 CG6518 CG3620 CG7875 .
VDRC has 1 RNAi stocks for FBgn0001263 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 24 of 4 0.50Down
Head1090 374 of 418.50Up
Eye3889 1184 of 465.81Up
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland2 00 of 4 0.04Down
Crop1 00 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.02Down
Fat body0 00 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca0 00 of 4 0.01Down
Adult carcass1 00 of 4 0.00Down
Larval CNS1 10 of 4 0.03Down
Larval Salivary gland0 00 of 4 0.01Down
Larval midgut2 10 of 4 0.05Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.02Down
Larval fat body1 00 of 4 0.00Down
Larval trachea50 981 of 4 0.85None
Larval carcass0 00 of 4 0.01Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly59 54 of 4

Looking for CG3504-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime