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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3508-RA through 18771 annotations produced 1 hits



(CG3508):

Annotation Number : CG3508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038251
Gbrowse : chr3R:10485162-10486905 (+) // 100.0 //
Probeset : 1638651_a_at
Accessions : protein= NP_650381; /// NP_731932;, nucleotide= NM_142124; /// NM_169595;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038251.
BioGrid reports that CG3508 interacts with CG9527 .
TRiP has 1 RNAi stocks for FBgn0038251 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038251 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain157 54 of 4 0.70None
Head118 94 of 4 0.60Down
Eye207 54 of 4 0.97None
Thoracicoabdominal ganglion160 74 of 4 0.70Down
Salivary gland82 43 of 4 0.39Down
Crop142 94 of 4 0.70Down
Midgut53 43 of 4 0.20Down
Tubule83 34 of 4 0.40Down
Hindgut104 54 of 4 0.50Down
Heart131 24 of 4 0.62Down
Fat body82 144 of 4 0.38Down
Ovary443 114 of 4 2.10Up
Testis210 74 of 4 1.00None
Male accessory glands47 10 of 4 0.20Down
Virgin spermatheca92 64 of 4 0.43Down
Mated spermatheca92 64 of 4 0.43Down
Adult carcass106 34 of 4 0.50Down
Larval CNS150 214 of 4 0.70Down
Larval Salivary gland54 10 of 4 0.26Down
Larval midgut47 34 of 4 0.22Down
Larval tubule98 54 of 4 0.50Down
Larval hindgut85 44 of 4 0.40Down
Larval fat body87 84 of 4 0.40Down
Larval trachea152 94 of 4 0.71Down
Larval carcass83 44 of 4 0.39Down
S2 cells (growing)92 44 of 4 0.43Down
Whole fly214 164 of 4

Looking for CG3508-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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