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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3509-RA through 18771 annotations produced 1 hits



(CG3509):

Annotation Number : CG3509
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038252
Gbrowse : chr3R:10489164-10490544 (+) // 100.0 //
Probeset : 1639853_at
Accessions : protein= NP_650383;, nucleotide= NM_142126;
Pathway : 0000786 // nucleosome // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotati
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0038252.
BDGP gene expression has embryonic in situ data for CG3509: 36 pix of staining in 7 body parts.
BioGrid reports that CG3509 interacts with CG9373 .
TRiP has 2 RNAi stocks for FBgn0038252 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038252 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.01Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule9 ± 80 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body1 ± 00 of 4 0.00Down
Ovary855 ± 14 of 4 2.40Up
Testis114 ± 24 of 4 0.30Down
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 20 of 4 0.01Down
Mated spermatheca2 ± 00 of 4 0.01Down
Adult carcass9 ± 70 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut1 ± 00 of 4 0.00Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body29 ± 91 of 4 0.10Down
Larval trachea1 ± 20 of 4 0.00Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly363 ± 154 of 4

Looking for CG3509-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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