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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3534-RA through 18771 annotations produced 1 hits



(CG3534):

Annotation Number : CG3534
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038463
Gbrowse : chr3R:12822173-12825172 (+) // 100.0 //
Probeset : 1635487_at
Accessions : protein= NP_650582;, nucleotide= NM_142325;
Interpro : "0004856 // xylulokinase activity // inferred from sequence or structural similarity /// 0004856 // xylulokinase activit
FlyMine data for FBgn0038463.
TRiP has 1 RNAi stocks for FBgn0038463 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038463 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 ± 34 of 4 0.40Down
Head256 ± 264 of 4 2.10Up
Eye119 ± 94 of 4 0.98None
Thoracicoabdominal ganglion54 ± 24 of 4 0.40Down
Salivary gland256 ± 214 of 4 2.10Up
Crop127 ± 164 of 4 1.00None
Midgut85 ± 84 of 4 0.70Down
Tubule577 ± 714 of 4 4.70Up
Hindgut180 ± 64 of 4 1.50Up
Heart313 ± 214 of 4 2.56Up
Fat body794 ± 874 of 4 6.50Up
Ovary152 ± 34 of 4 1.20Up
Testis52 ± 44 of 4 0.40Down
Male accessory glands234 ± 164 of 4 1.90Up
Virgin spermatheca1499 ± 824 of 412.27Up
Mated spermatheca1131 ± 804 of 4 9.25Up
Adult carcass454 ± 364 of 4 3.70Up
Larval CNS58 ± 54 of 4 0.47Down
Larval Salivary gland479 ± 384 of 4 3.92Up
Larval midgut281 ± 544 of 4 2.30None
Larval tubule748 ± 404 of 4 6.10Up
Larval hindgut381 ± 714 of 4 3.12Up
Larval fat body98 ± 44 of 4 0.80Down
Larval trachea178 ± 204 of 4 1.46Up
Larval carcass149 ± 114 of 4 1.22None
S2 cells (growing)155 ± 44 of 4 1.27Up
Whole fly122 ± 54 of 4

Looking for CG3534-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime