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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3536-RA through 18771 annotations produced 1 hits



CG13530 (CG42260):

Annotation Number : CG3536
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259145
Gbrowse : chr2R:18630934-18648109 (-) // 100.0 //
Probeset : 1623394_at
Accessions : protein= NP_001137739; /// NP_611715; /// NP_611717;, nucleotide= NM_001144267; /// NM_137871; /// NM_137873; /// NM_137873;
Interpro : 0005221 // intracellular cyclic nucleotide activated cation channel activity // inferred from sequence or structural sim
FlyMine data for FBgn0259145.
Homophila reports that CG3536 is a close match (3e-24) to human gene HERG;KCNH2;LQT2;SQT1 (NP_742053), a gene associated with Long QT syndrome-2 (3);Short QT syndrome-1, 609620 (3);{Long QT syndrome, acquired, susceptibility to} (3).
BioGrid reports that CG3536 interacts with CG6866 .
TRiP has 1 RNAi stocks for FBgn0259145 available for purchase.
VDRC has 7 RNAi stocks for FBgn0259145 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 00 of 411.50None
Head1 00 of 4 1.80None
Eye4 20 of 4 4.97None
Thoracicoabdominal ganglion7 20 of 4 9.20None
Salivary gland6 20 of 4 7.47None
Crop3 10 of 4 4.40None
Midgut5 10 of 4 6.60Up
Tubule3 00 of 4 4.50Up
Hindgut1 00 of 4 2.20Up
Heart5 00 of 4 6.56Up
Fat body8 60 of 4 9.94None
Ovary2 10 of 4 2.90None
Testis3 10 of 4 4.30None
Male accessory glands5 20 of 4 6.80None
Virgin spermatheca5 10 of 4 6.94None
Mated spermatheca5 20 of 4 6.03None
Adult carcass4 10 of 4 5.40None
Larval CNS4 00 of 4 5.62Up
Larval Salivary gland7 30 of 4 8.44None
Larval midgut6 10 of 4 7.76Up
Larval tubule2 00 of 4 2.30None
Larval hindgut3 10 of 4 3.50None
Larval fat body10 20 of 411.90Up
Larval trachea6 10 of 4 7.85Up
Larval carcass7 10 of 4 8.68Up
S2 cells (growing)2 00 of 4 3.18None
Whole fly0 00 of 4

Looking for CG3536-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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