FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3541-RC through 18771 annotations produced 2 hits

piopio (pio):

Annotation Number : CG3541
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020521
Gbrowse : chr2R:20468794-20480282 (+) // 100.0 //
Probeset : 1628672_at
Accessions : protein= NP_001163295; /// NP_611938; /// NP_726461;, nucleotide= NM_001169824; /// NM_138094; /// NM_166677;
Pathway : 0045177 // apical part of cell // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0020521.
VDRC has 2 RNAi stocks for FBgn0020521 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.60	Down
Head	7 ± 1	2 of 4	1.50	None
Eye	3 ± 1	0 of 4	0.81	None
Thoracicoabdominal ganglion	4 ± 2	1 of 4	0.90	None
Salivary gland	28 ± 3	3 of 4	6.01	Up
Crop	18 ± 1	4 of 4	3.80	Up
Midgut	2 ± 0	0 of 4	0.50	None
Tubule	1 ± 0	0 of 4	0.30	Down
Hindgut	9 ± 1	2 of 4	1.90	Up
Heart	1 ± 0	0 of 4	0.21	Down
Fat body	3 ± 1	0 of 4	0.66	None
Ovary	1 ± 0	0 of 4	0.30	Down
Testis	3 ± 0	0 of 4	0.70	None
Male accessory glands	2 ± 0	0 of 4	0.40	Down
Virgin spermatheca	3 ± 1	0 of 4	0.70	None
Mated spermatheca	5 ± 1	0 of 4	1.10	None
Adult carcass	7 ± 1	0 of 4	1.60	None
Larval CNS	3 ± 1	1 of 4	0.69	None
Larval Salivary gland	3 ± 1	0 of 4	0.74	None
Larval midgut	2 ± 0	0 of 4	0.46	None
Larval tubule	2 ± 0	0 of 4	0.50	None
Larval hindgut	4 ± 0	0 of 4	1.02	None
Larval fat body	3 ± 1	0 of 4	0.80	None
Larval trachea	6 ± 0	1 of 4	1.32	None
Larval carcass	6 ± 0	1 of 4	1.26	None
S2 cells (growing)	3 ± 0	0 of 4	0.66	None
Whole fly	4 ± 0	2 of 4

piopio (pio):

Annotation Number : CG3541
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020521
Gbrowse : chr2R:20468794-20480282 (+) // 100.0 //
Probeset : 1631454_a_at
Accessions : protein= NP_001163295; /// NP_611938; /// NP_726461;, nucleotide= NM_001169824; /// NM_138094; /// NM_166677;
Pathway : 0045177 // apical part of cell // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0020521.
VDRC has 2 RNAi stocks for FBgn0020521 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 0	0 of 4	0.20	Down
Head	96 ± 13	4 of 4	2.50	Up
Eye	19 ± 1	4 of 4	0.50	Down
Thoracicoabdominal ganglion	12 ± 2	2 of 4	0.30	Down
Salivary gland	343 ± 25	4 of 4	9.06	Up
Crop	202 ± 17	4 of 4	5.30	Up
Midgut	34 ± 2	3 of 4	0.90	None
Tubule	11 ± 1	0 of 4	0.30	Down
Hindgut	104 ± 3	4 of 4	2.80	Up
Heart	5 ± 1	1 of 4	0.15	Down
Fat body	16 ± 2	2 of 4	0.43	Down
Ovary	10 ± 0	1 of 4	0.30	Down
Testis	4 ± 1	1 of 4	0.10	Down
Male accessory glands	26 ± 1	2 of 4	0.70	None
Virgin spermatheca	14 ± 2	3 of 4	0.37	Down
Mated spermatheca	16 ± 0	2 of 4	0.43	Down
Adult carcass	86 ± 4	4 of 4	2.30	Up
Larval CNS	9 ± 1	3 of 4	0.25	Down
Larval Salivary gland	49 ± 4	0 of 4	1.30	None
Larval midgut	21 ± 2	1 of 4	0.56	Down
Larval tubule	13 ± 2	2 of 4	0.30	Down
Larval hindgut	102 ± 1	4 of 4	2.71	Up
Larval fat body	13 ± 4	1 of 4	0.40	Down
Larval trachea	50 ± 12	4 of 4	1.33	None
Larval carcass	110 ± 15	4 of 4	2.91	Up
S2 cells (growing)	9 ± 0	0 of 4	0.24	Down
Whole fly	37 ± 5	4 of 4

Looking for CG3541-RC. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720