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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3542-RA through 18771 annotations produced 1 hits


Annotation Number : CG3542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031492
Gbrowse : chr2L:3023234-3026450 (+) // 100.0 //
Probeset : 1638446_a_at
Accessions : protein= NP_608738; /// NP_722868;, nucleotide= NM_134894; /// NM_164521;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0031492.
BDGP gene expression has embryonic in situ data for CG3542: 18 pix of staining in 12 body parts.
BioGrid reports that CG3542 interacts with CG4303 CG3861 .
TRiP has 1 RNAi stocks for FBgn0031492 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031492 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 24 of 4 1.20None
Head46 34 of 4 0.60Down
Eye29 14 of 4 0.36Down
Thoracicoabdominal ganglion85 44 of 4 1.00None
Salivary gland53 54 of 4 0.66None
Crop43 44 of 4 0.50Down
Midgut48 34 of 4 0.60Down
Tubule49 14 of 4 0.60Down
Hindgut53 44 of 4 0.60Down
Heart39 24 of 4 0.49Down
Fat body39 13 of 4 0.49Down
Ovary200 74 of 4 2.40Up
Testis33 14 of 4 0.40Down
Male accessory glands80 64 of 4 1.00None
Virgin spermatheca43 24 of 4 0.53Down
Mated spermatheca48 33 of 4 0.59Down
Adult carcass41 34 of 4 0.50Down
Larval CNS230 174 of 4 2.82Up
Larval Salivary gland105 44 of 4 1.29None
Larval midgut50 54 of 4 0.61Down
Larval tubule48 54 of 4 0.60Down
Larval hindgut72 64 of 4 0.88None
Larval fat body57 54 of 4 0.70None
Larval trachea102 74 of 4 1.25None
Larval carcass80 44 of 4 0.98None
S2 cells (growing)131 54 of 4 1.61Up
Whole fly81 94 of 4

Looking for CG3542-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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