FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3546-RA through 18771 annotations produced 1 hits

(CG3546):

Annotation Number : CG3546
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029716
Gbrowse : chrX:4452104-4454035 (+) // 100.0 //
Probeset : 1633842_at
Accessions : protein= NP_572172;, nucleotide= NM_131944;
FlyMine data for FBgn0029716.
VDRC has 3 RNAi stocks for FBgn0029716 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	0.70	None
Head	4 ± 1	1 of 4	1.00	None
Eye	1 ± 0	0 of 4	0.28	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.30	None
Salivary gland	8 ± 4	0 of 4	1.99	None
Crop	3 ± 1	0 of 4	0.70	None
Midgut	2 ± 0	0 of 4	0.60	None
Tubule	3 ± 1	0 of 4	0.90	None
Hindgut	3 ± 1	0 of 4	0.90	None
Heart	3 ± 0	0 of 4	0.72	None
Fat body	4 ± 1	0 of 4	1.07	None
Ovary	0 ± 0	0 of 4	0.20	None
Testis	0 ± 0	0 of 4	0.20	None
Male accessory glands	3 ± 2	0 of 4	0.80	None
Virgin spermatheca	1 ± 0	0 of 4	0.41	None
Mated spermatheca	2 ± 1	0 of 4	0.55	None
Adult carcass	4 ± 1	0 of 4	1.00	None
Larval CNS	1 ± 1	0 of 4	0.43	None
Larval Salivary gland	4 ± 1	0 of 4	1.13	None
Larval midgut	2 ± 1	0 of 4	0.54	None
Larval tubule	4 ± 1	0 of 4	1.00	None
Larval hindgut	2 ± 1	0 of 4	0.60	None
Larval fat body	1 ± 0	0 of 4	0.30	None
Larval trachea	4 ± 3	0 of 4	0.97	None
Larval carcass	2 ± 0	0 of 4	0.51	None
S2 cells (growing)	1 ± 0	0 of 4	0.42	None
Whole fly	4 ± 1	0 of 4

Looking for CG3546-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720