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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3564-RA through 18771 annotations produced 1 hits



CHOp24 (CHOp24):

Annotation Number : CG3564
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029709
Gbrowse : chrX:4434942-4436471 (+) // 99.64 //
Probeset : 1623771_at
Accessions : protein= NP_572165;, nucleotide= NM_131937;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029709.
BioGrid reports that CG3564 interacts with CG4027 CG7456 .
VDRC has 3 RNAi stocks for FBgn0029709 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain331 94 of 4 1.10None
Head437 154 of 4 1.40Up
Eye836 54 of 4 2.70Up
Thoracicoabdominal ganglion342 164 of 4 1.10None
Salivary gland2124 1044 of 4 6.87Up
Crop441 64 of 4 1.40Up
Midgut610 174 of 4 2.00Up
Tubule346 174 of 4 1.10Up
Hindgut410 84 of 4 1.30Up
Heart737 224 of 4 2.39Up
Fat body606 584 of 4 1.96Up
Ovary305 64 of 4 1.00None
Testis114 24 of 4 0.40Down
Male accessory glands2034 894 of 4 6.60Up
Virgin spermatheca915 474 of 4 2.96Up
Mated spermatheca1007 714 of 4 3.26Up
Adult carcass449 94 of 4 1.50Up
Larval CNS393 254 of 4 1.27Up
Larval Salivary gland3628 2304 of 411.73Up
Larval midgut618 214 of 4 2.00Up
Larval tubule535 104 of 4 1.70Up
Larval hindgut579 134 of 4 1.87Up
Larval fat body760 764 of 4 2.50Up
Larval trachea936 1194 of 4 3.03Up
Larval carcass699 394 of 4 2.26Up
S2 cells (growing)807 74 of 4 2.61Up
Whole fly309 224 of 4

Looking for CG3564-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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