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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3565-RA through 18771 annotations produced 1 hits



(CG3565):

Annotation Number : CG3565
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035034
Gbrowse : chr2R:20489994-20491011 (+) // 100.0 //
Probeset : 1634155_at
Accessions : protein= NP_611942;, nucleotide= NM_138098;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0035034.
BDGP gene expression has embryonic in situ data for CG3565: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035034 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye2 00 of 4 0.03Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland4 10 of 4 0.05Down
Crop2 10 of 4 0.00Down
Midgut3 10 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart1 10 of 4 0.02Down
Fat body2 20 of 4 0.03Down
Ovary2 10 of 4 0.00Down
Testis918 234 of 411.10Up
Male accessory glands9 10 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.03Down
Mated spermatheca3 10 of 4 0.04Down
Adult carcass8 20 of 4 0.10Down
Larval CNS1 10 of 4 0.01Down
Larval Salivary gland3 10 of 4 0.05Down
Larval midgut3 10 of 4 0.04Down
Larval tubule6 30 of 4 0.10Down
Larval hindgut3 00 of 4 0.04Down
Larval fat body72 343 of 4 0.90None
Larval trachea2 41 of 4 0.04Down
Larval carcass2 10 of 4 0.03Down
S2 cells (growing)2 00 of 4 0.03Down
Whole fly82 34 of 4

Looking for CG3565-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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