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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3566-RB through 18771 annotations produced 1 hits



(CG3566):

Annotation Number : CG3566
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029854
Gbrowse : chrX:6169036-6170711 (-) // 100.0 //
Probeset : 1638923_at
Accessions : protein= NP_572304; /// NP_996355;, nucleotide= NM_132076; /// NM_206632;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred fr
FlyMine data for FBgn0029854.
BDGP gene expression has embryonic in situ data for CG3566: 4 pix of staining in 1 body parts.
Homophila reports that CG3566 is a close match (2e-16) to human gene CYB5A;MCB5 (NP_001905), a gene associated with Methemoglobinemia due to cytochrome b5 deficiency (3).
BioGrid reports that CG3566 interacts with CG6394 .
VDRC has 1 RNAi stocks for FBgn0029854 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain448 ± 94 of 4 1.00None
Head761 ± 284 of 4 1.60Up
Eye579 ± 324 of 4 1.23Up
Thoracicoabdominal ganglion540 ± 314 of 4 1.20None
Salivary gland510 ± 214 of 4 1.09None
Crop533 ± 344 of 4 1.10None
Midgut397 ± 54 of 4 0.80None
Tubule1099 ± 594 of 4 2.30Up
Hindgut705 ± 84 of 4 1.50Up
Heart860 ± 564 of 4 1.83Up
Fat body768 ± 644 of 4 1.64Up
Ovary434 ± 54 of 4 0.90None
Testis148 ± 84 of 4 0.30Down
Male accessory glands524 ± 374 of 4 1.10None
Virgin spermatheca732 ± 154 of 4 1.56Up
Mated spermatheca703 ± 54 of 4 1.50Up
Adult carcass751 ± 314 of 4 1.60Up
Larval CNS321 ± 64 of 4 0.68Down
Larval Salivary gland697 ± 454 of 4 1.48Up
Larval midgut252 ± 44 of 4 0.54Down
Larval tubule1412 ± 544 of 4 3.00Up
Larval hindgut530 ± 264 of 4 1.13None
Larval fat body976 ± 614 of 4 2.10Up
Larval trachea457 ± 494 of 4 0.97None
Larval carcass388 ± 134 of 4 0.83None
S2 cells (growing)477 ± 104 of 4 1.02None
Whole fly470 ± 294 of 4

Looking for CG3566-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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