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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3569-RA through 18771 annotations produced 1 hits



Odorant receptor 59b (Or59b):

Annotation Number : CG3569
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034865
Gbrowse : chr2R:19357924-19359233 (-) // 100.0 //
Probeset : 1630037_at
Accessions : protein= NP_523822;, nucleotide= NM_079098;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0034865.
VDRC has 3 RNAi stocks for FBgn0034865 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.70None
Head20 ± 14 of 4 3.30Up
Eye5 ± 00 of 4 0.85None
Thoracicoabdominal ganglion7 ± 11 of 4 1.20None
Salivary gland6 ± 20 of 4 1.05None
Crop6 ± 21 of 4 1.00None
Midgut7 ± 10 of 4 1.20None
Tubule4 ± 10 of 4 0.80None
Hindgut6 ± 10 of 4 1.00None
Heart3 ± 00 of 4 0.56None
Fat body7 ± 31 of 4 1.28None
Ovary2 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.20None
Male accessory glands242 ± 34 of 439.10Up
Virgin spermatheca6 ± 00 of 4 1.06None
Mated spermatheca6 ± 10 of 4 1.08None
Adult carcass7 ± 10 of 4 1.20None
Larval CNS3 ± 21 of 4 0.64None
Larval Salivary gland3 ± 10 of 4 0.58None
Larval midgut8 ± 20 of 4 1.37None
Larval tubule2 ± 00 of 4 0.30None
Larval hindgut3 ± 10 of 4 0.50None
Larval fat body1 ± 00 of 4 0.20None
Larval trachea4 ± 20 of 4 0.65None
Larval carcass4 ± 00 of 4 0.66None
S2 cells (growing)3 ± 11 of 4 0.60None
Whole fly6 ± 11 of 4

Looking for CG3569-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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