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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3573-RA through 18771 annotations produced 1 hits

inositol 5-phosphatase (CG3573):

Annotation Number : CG3573
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023508
Gbrowse : chrX:1817037-1821555 (+) // 100.0 //
Probeset : 1638197_at
Accessions : protein= NP_569962;, nucleotide= NM_130606;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0004445 // i
FlyMine data for FBgn0023508.
BDGP gene expression has embryonic in situ data for EG:86E4.5: 4 pix of staining in 1 body parts.
Homophila reports that CG3573 is a close match (5e-101) to human gene LOCR;NPHL2;OCRL;OCRL1 (NP_000267), a gene associated with Dent syndrome, 300009 (3);Lowe syndrome, 309000 (3).
TRiP has 1 RNAi stocks for FBgn0023508 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023508 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain270 104 of 4 2.20Up
Head144 74 of 4 1.20None
Eye202 54 of 4 1.64Up
Thoracicoabdominal ganglion259 74 of 4 2.10Up
Salivary gland1100 504 of 4 8.89Up
Crop157 44 of 4 1.30Up
Midgut168 84 of 4 1.40Up
Tubule202 44 of 4 1.60Up
Hindgut162 64 of 4 1.30Up
Heart67 64 of 4 0.55Down
Fat body69 154 of 4 0.56Down
Ovary189 64 of 4 1.50Up
Testis63 34 of 4 0.50Down
Male accessory glands105 14 of 4 0.90None
Virgin spermatheca79 24 of 4 0.64Down
Mated spermatheca96 104 of 4 0.78None
Adult carcass94 34 of 4 0.80None
Larval CNS157 104 of 4 1.27Up
Larval Salivary gland326 154 of 4 2.64Up
Larval midgut129 54 of 4 1.05None
Larval tubule180 64 of 4 1.50Up
Larval hindgut130 54 of 4 1.05None
Larval fat body75 64 of 4 0.60Down
Larval trachea85 54 of 4 0.69Down
Larval carcass135 34 of 4 1.09None
S2 cells (growing)179 24 of 4 1.45Up
Whole fly123 94 of 4

Looking for CG3573-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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