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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3576-RA through 18771 annotations produced 1 hits



longevity (schlank):

Annotation Number : CG3576
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040918
Gbrowse : chrX:6151690-6161260 (-) // 100.0 //
Probeset : 1629286_s_at
Accessions : protein= NP_652526; /// NP_727075;, nucleotide= NM_144269; /// NM_167063;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006641 // triglyceride metabolic process // inferred from mut
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequence or st
FlyMine data for FBgn0040918.
BioGrid reports that CG3576 interacts with CG4491 .
TRiP has 1 RNAi stocks for FBgn0040918 available for purchase.
VDRC has 5 RNAi stocks for FBgn0040918 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain354 ± 144 of 4 1.80Up
Head208 ± 164 of 4 1.00None
Eye187 ± 144 of 4 0.94None
Thoracicoabdominal ganglion412 ± 344 of 4 2.10Up
Salivary gland232 ± 94 of 4 1.16Up
Crop167 ± 84 of 4 0.80Down
Midgut479 ± 214 of 4 2.40Up
Tubule170 ± 84 of 4 0.90Down
Hindgut205 ± 104 of 4 1.00None
Heart268 ± 224 of 4 1.34None
Fat body403 ± 414 of 4 2.01Up
Ovary297 ± 44 of 4 1.50Up
Testis73 ± 64 of 4 0.40Down
Male accessory glands182 ± 64 of 4 0.90None
Virgin spermatheca256 ± 214 of 4 1.28None
Mated spermatheca230 ± 94 of 4 1.15None
Adult carcass125 ± 84 of 4 0.60Down
Larval CNS560 ± 834 of 4 2.80Up
Larval Salivary gland243 ± 234 of 4 1.21None
Larval midgut504 ± 224 of 4 2.52Up
Larval tubule526 ± 174 of 4 2.60Up
Larval hindgut498 ± 164 of 4 2.48Up
Larval fat body1046 ± 994 of 4 5.20Up
Larval trachea285 ± 134 of 4 1.43Up
Larval carcass254 ± 114 of 4 1.27Up
S2 cells (growing)359 ± 144 of 4 1.80Up
Whole fly200 ± 14 of 4

Looking for CG3576-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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